Issues · IMP / IMP3 · GitLab

Assembly/Analysis: replace perl scripts for contig stats

#52 · created Oct 05, 2021 by Valentina Galata discussion enhancement feature
- 0
updated Oct 05, 2021
Assembly: merging/consensus: replace CAP3

#11 · created Jul 22, 2020 by Valentina Galata Assembly enhancement
- 16
updated Mar 17, 2021
Assembly: MG/MT assembly with MetaSPAdes

#36 · created Aug 23, 2021 by Valentina Galata enhancement feature
- 0
updated Aug 23, 2021
Assembly stats: metaQUAST

#50 · created Sep 24, 2021 by Valentina Galata discussion enhancement feature
- 2
updated Sep 27, 2021
Binning: add updated binny

#57 · created Feb 25, 2022 by Valentina Galata Analysis & Binning updates enhancement feature update
- 2
updated Jun 03, 2022
Bug: config tmp folder is ignored during rRNA filtering

#24 · created Jun 09, 2021 by Valentina Galata Overhaul bug
- 0
updated Oct 08, 2021
Conda envs: smaller YAML files

#47 · created Sep 13, 2021 by Valentina Galata Overhaul discussion enhancement
- 1
updated Feb 04, 2022
Configuration: configs, profiles and launchers

#41 · created Aug 27, 2021 by Valentina Galata Overhaul discussion enhancement
- 2
updated Apr 19, 2022
Config: use appropriate in-built data types 0 of 3 tasks completed

#35 · created Aug 20, 2021 by Valentina Galata Overhaul enhancement
- 3
updated Sep 24, 2021
Docs: Trimmomatic adapters

#18 · created Nov 11, 2020 by Valentina Galata documentation
- 0
updated Nov 11, 2020
Error in rule merge_assembly_cap3 - segmentation fault

#56 · created Dec 07, 2021 by javiercnav incident
- 1
updated Dec 07, 2021
Feature/Doc: SE (metaT) as input

#25 · created Jul 08, 2021 by Valentina Galata documentation feature
- 2
updated Aug 23, 2021
Formatting convention

#43 · created Aug 27, 2021 by Valentina Galata Overhaul discussion documentation enhancement
- 3
updated Oct 08, 2021
Input/output: work with compressed FASTQ files

#31 · created Aug 17, 2021 by Valentina Galata discussion enhancement
- 6
updated Aug 18, 2021
Job fails due to conda environment installation

#55 · created Dec 03, 2021 by michoug documentation incident installation
- 3
updated Dec 08, 2021
Mantis GFF script: decrease runtime for big samples

#63 · created Jun 08, 2022 by Valentina Galata Analysis & Binning updates enhancement
- 0
updated Jun 10, 2022
MANTIS: setup and rules 10 of 11 tasks completed

#15 · created Oct 15, 2020 by Valentina Galata Analysis & Binning updates enhancement feature installation
- 21
updated Mar 02, 2022
nonpareil: simplify the rule

#38 · created Aug 23, 2021 by Valentina Galata Overhaul enhancement
- 1
updated Feb 10, 2022
Output: minimize output size

#32 · created Aug 17, 2021 by Valentina Galata discussion documentation enhancement feature
- 11
updated Aug 27, 2021
PathoFact: include latest version

#23 · created Mar 01, 2021 by Valentina Galata Analysis & Binning updates feature update
- 2
updated Feb 25, 2022