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IMP3
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18
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Blocking
Mantis GFF script: decrease runtime for big samples
#63
· created
Jun 08, 2022
by
Valentina Galata
Analysis & Binning updates
enhancement
0
updated
Jun 10, 2022
Binning: add updated binny
#57
· created
Feb 25, 2022
by
Valentina Galata
Analysis & Binning updates
enhancement
feature
update
2
updated
Jun 03, 2022
Assembly/Analysis: replace perl scripts for contig stats
#52
· created
Oct 05, 2021
by
Valentina Galata
discussion
enhancement
feature
0
updated
Oct 05, 2021
Preprocessing: kneaddata for reads filtering
#51
· created
Sep 30, 2021
by
Valentina Galata
discussion
enhancement
feature
0
updated
Sep 30, 2021
Assembly stats: metaQUAST
#50
· created
Sep 24, 2021
by
Valentina Galata
discussion
enhancement
feature
2
updated
Sep 27, 2021
Conda envs: smaller YAML files
#47
· created
Sep 13, 2021
by
Valentina Galata
Overhaul
discussion
enhancement
1
updated
Feb 04, 2022
Unit testing, CI and merging
#45
· created
Aug 27, 2021
by
Valentina Galata
Overhaul
discussion
enhancement
test
1
updated
Oct 26, 2021
Formatting convention
#43
· created
Aug 27, 2021
by
Valentina Galata
Overhaul
discussion
documentation
enhancement
3
updated
Oct 08, 2021
Configuration: configs, profiles and launchers
#41
· created
Aug 27, 2021
by
Valentina Galata
Overhaul
discussion
enhancement
2
updated
Apr 19, 2022
nonpareil: simplify the rule
#38
· created
Aug 23, 2021
by
Valentina Galata
Overhaul
enhancement
1
updated
Feb 10, 2022
Assembly: MG/MT assembly with MetaSPAdes
#36
· created
Aug 23, 2021
by
Valentina Galata
enhancement
feature
0
updated
Aug 23, 2021
Config: use appropriate in-built data types
0 of 3 tasks completed
#35
· created
Aug 20, 2021
by
Valentina Galata
Overhaul
enhancement
3
updated
Sep 24, 2021
Output: minimize output size
#32
· created
Aug 17, 2021
by
Valentina Galata
discussion
documentation
enhancement
feature
11
updated
Aug 27, 2021
Input/output: work with compressed FASTQ files
#31
· created
Aug 17, 2021
by
Valentina Galata
discussion
enhancement
6
updated
Aug 18, 2021
Taxonomy: kraken2 on reads: combine PE and SE reads
#27
· created
Jul 20, 2021
by
Valentina Galata
enhancement
9
updated
Aug 19, 2021
MANTIS: setup and rules
10 of 11 tasks completed
#15
· created
Oct 15, 2020
by
Valentina Galata
Analysis & Binning updates
enhancement
feature
installation
21
updated
Mar 02, 2022
Read filtering: rm rRNA reads: replace sortmerna
#12
· created
Aug 17, 2020
by
Valentina Galata
discussion
enhancement
feature
1
4
updated
Jun 02, 2021
Assembly: merging/consensus: replace CAP3
#11
· created
Jul 22, 2020
by
Valentina Galata
Assembly
enhancement
16
updated
Mar 17, 2021