Skip to content

GitLab

  • Menu
Projects Groups Snippets
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
  • Sign in
  • I IMP3
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
    • Locked Files
  • Issues 28
    • Issues 28
    • List
    • Boards
    • Service Desk
    • Milestones
    • Iterations
    • Requirements
  • Merge requests 3
    • Merge requests 3
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
    • Test Cases
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Monitor
    • Monitor
    • Incidents
  • Packages & Registries
    • Packages & Registries
    • Package Registry
    • Container Registry
    • Infrastructure Registry
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Code review
    • Insights
    • Issue
    • Repository
  • Wiki
    • Wiki
  • External wiki
    • External wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • IMP
  • IMP3
  • Issues

  • Open 18
  • Closed 15
  • All 33
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Mantis GFF script: decrease runtime for big samples
    #63 · created Jun 08, 2022 by Valentina Galata   Analysis & Binning updates   enhancement
    • 0
    updated Jun 10, 2022
  • Binning: add updated binny
    #57 · created Feb 25, 2022 by Valentina Galata   Analysis & Binning updates   enhancement feature update
    • 2
    updated Jun 03, 2022
  • Assembly/Analysis: replace perl scripts for contig stats
    #52 · created Oct 05, 2021 by Valentina Galata   discussion enhancement feature
    • 0
    updated Oct 05, 2021
  • Preprocessing: kneaddata for reads filtering
    #51 · created Sep 30, 2021 by Valentina Galata   discussion enhancement feature
    • 0
    updated Sep 30, 2021
  • Assembly stats: metaQUAST
    #50 · created Sep 24, 2021 by Valentina Galata   discussion enhancement feature
    • 2
    updated Sep 27, 2021
  • Conda envs: smaller YAML files
    #47 · created Sep 13, 2021 by Valentina Galata   Overhaul   discussion enhancement
    • 1
    updated Feb 04, 2022
  • Unit testing, CI and merging
    #45 · created Aug 27, 2021 by Valentina Galata   Overhaul   discussion enhancement test
    • 1
    updated Oct 26, 2021
  • Formatting convention
    #43 · created Aug 27, 2021 by Valentina Galata   Overhaul   discussion documentation enhancement
    • 3
    updated Oct 08, 2021
  • Configuration: configs, profiles and launchers
    #41 · created Aug 27, 2021 by Valentina Galata   Overhaul   discussion enhancement
    • 2
    updated Apr 19, 2022
  • nonpareil: simplify the rule
    #38 · created Aug 23, 2021 by Valentina Galata   Overhaul   enhancement
    • 1
    updated Feb 10, 2022
  • Assembly: MG/MT assembly with MetaSPAdes
    #36 · created Aug 23, 2021 by Valentina Galata   enhancement feature
    • 0
    updated Aug 23, 2021
  • Config: use appropriate in-built data types   0 of 3 tasks completed
    #35 · created Aug 20, 2021 by Valentina Galata   Overhaul   enhancement
    • 3
    updated Sep 24, 2021
  • Output: minimize output size
    #32 · created Aug 17, 2021 by Valentina Galata   discussion documentation enhancement feature
    • 11
    updated Aug 27, 2021
  • Input/output: work with compressed FASTQ files
    #31 · created Aug 17, 2021 by Valentina Galata   discussion enhancement
    • 6
    updated Aug 18, 2021
  • Taxonomy: kraken2 on reads: combine PE and SE reads
    #27 · created Jul 20, 2021 by Valentina Galata   enhancement
    • 9
    updated Aug 19, 2021
  • MANTIS: setup and rules   10 of 11 tasks completed
    #15 · created Oct 15, 2020 by Valentina Galata   Analysis & Binning updates   enhancement feature installation
    • 21
    updated Mar 02, 2022
  • Read filtering: rm rRNA reads: replace sortmerna
    #12 · created Aug 17, 2020 by Valentina Galata   discussion enhancement feature
    • 1
    • 4
    updated Jun 02, 2021
  • Assembly: merging/consensus: replace CAP3
    #11 · created Jul 22, 2020 by Valentina Galata   Assembly   enhancement
    • 16
    updated Mar 17, 2021