Issues · IMP / IMP3 · GitLab

Assembly/Analysis: replace perl scripts for contig stats

#52 · created Oct 05, 2021 by Valentina Galata discussion enhancement feature
- 0
updated Oct 05, 2021
Preprocessing: kneaddata for reads filtering

#51 · created Sep 30, 2021 by Valentina Galata discussion enhancement feature
- 0
updated Sep 30, 2021
Assembly stats: metaQUAST

#50 · created Sep 24, 2021 by Valentina Galata discussion enhancement feature
- 2
updated Sep 27, 2021
Conda envs: smaller YAML files

#47 · created Sep 13, 2021 by Valentina Galata Overhaul discussion enhancement
- 1
updated Feb 04, 2022
Unit testing, CI and merging

#45 · created Aug 27, 2021 by Valentina Galata Overhaul discussion enhancement test
- 1
updated Oct 26, 2021
Formatting convention

#43 · created Aug 27, 2021 by Valentina Galata Overhaul discussion documentation enhancement
- 3
updated Oct 08, 2021
Configuration: configs, profiles and launchers

#41 · created Aug 27, 2021 by Valentina Galata Overhaul discussion enhancement
- 2
updated Apr 19, 2022
Output: minimize output size

#32 · created Aug 17, 2021 by Valentina Galata discussion documentation enhancement feature
- 11
updated Aug 27, 2021
Input/output: work with compressed FASTQ files

#31 · created Aug 17, 2021 by Valentina Galata discussion enhancement
- 6
updated Aug 18, 2021
Read filtering: rm rRNA reads: replace sortmerna

#12 · created Aug 17, 2020 by Valentina Galata discussion enhancement feature
- 1
- 4
updated Jun 02, 2021