Job fails due to conda environment installation
Bug report
Hi, When launching IMP3 jobs using the iris cluster and the attached files, in some cases, this error happens :
/home/users/gmichoud/IMP3/.
Building DAG of jobs...
Creating conda environment /home/users/gmichoud/IMP3/workflow/rules/ini/../../envs/IMP_binning.yaml...
Downloading and installing remote packages.
CreateCondaEnvironmentException:
Could not create conda environment from /home/users/gmichoud/IMP3/workflow/rules/ini/../../envs/IMP_binning.yaml:
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working...
####################################################################################
das_tool version 1.1.1-2 has been successfully installed!
This software by default runs with USEARCH. You can install it from the following links or use DIAMOND '--search_engine diamond'
> Download: http://www.drive5.com/usearch/download.html
> Installation instruction: http://www.drive5.com/usearch/manual/install.html
done
ERROR conda.core.link:_execute(699): An error occurred while installing package 'conda-forge::fribidi-1.0.5-h516909a_1002'.
Rolling back transaction: ...working... done
CondaError: Cannot link a source that does not exist. /home/users/gmichoud/IMP3/conda/4788f34499eae03fa997bfd1ba6c307c/.condatmp/e7595ab0-dd9c-485f-beb1-48de0bac8174
Running `conda clean --packages` may resolve your problem.
()
the python version I use is Python 3.9.1, installed via Miniconda.
The git branch is the latest updated (as of yesterday)
Any ideas?
Best
Greg