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  • #52

Closed
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Created Oct 05, 2021 by Valentina Galata@valentina.galataMaintainer

Assembly/Analysis: replace perl scripts for contig stats

Feature request

To simplify the code (and avoid hard-coded paths in the CMD), replace the Perl scripts used in contig-length.smk to compute contig length and GC content by already existing utils.

For example, seqkit provides a utility to do that (see sub-command fx2tab here) and this tool is already included in multiple conda environments.

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