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  • #35

Closed
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Created Aug 20, 2021 by Valentina Galata@valentina.galataMaintainer0 of 3 tasks completed0/3 tasks

Config: use appropriate in-built data types

  • use lists instead of strings if multiple values should/can be given for an attribute
    • steps
    • input files for MG/MT
    • summary_steps
    • filtering: filter
    • sortmerna: files
    • hmm_DBs
    • COGS
    • binners
  • use a boolean instead of a string for true/false attributes
    • e.g. settingsLocked
      • edit: use True or False in the snakemake command when overwriting parameters with --config
  • update/expand config validation schema
Edited Aug 25, 2021 by Valentina Galata
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