Feature/Doc: SE (metaT) as input
Not sure if this is a bug, missing feature or missing documentation, but the pipeline fails when having only single-end (SE) reads as input.
Used config parameters for the raw data:
raws:
Metatranscriptomics: some/path/Sample_R1_001.fastq.gz
Error message:
Building DAG of jobs...
MissingInputException in line 110 of /mnt/irisgpfs/users/vgalata/projects/sofunmoni/submodules/imp3/workflow/rules/Preprocessing/trimming.smk:
Missing input files for rule trimming:
Preprocessing/mt.r2.fq
Preprocessing/mt.r1.fq
IMP3 version: 47a4181a