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Read filtering: rm rRNA reads: replace sortmerna

sortmerna's version 2.1 creates "corrupted" output files (see here). The newest version 4.2.0 has issues with the running time (e.g. see here).

Maybe it is better to look for alternatives. E.g. BBDuk.

Test data: /work/projects/ecosystem_biology/local_tools/IMP3devel/test/

Edited Feb 17, 2021 by Valentina Galata

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Read filtering: rm rRNA reads: replace sortmerna