Commits · master · IMP / IMP3 · GitLab

18 May, 2022 2 commits
- sortmerna: updated rules filter_rrna_pe/se (temp work dirs; issue #33 , #60 ) [skip ci] · fddf6d44
  Valentina Galata authored May 18, 2022
  
  fddf6d44
- sortmerna: updated rule filter_rna (issue #33 , #60 ) [skip ci] · 3f8545e5
  Valentina Galata authored May 18, 2022
  
  3f8545e5
17 May, 2022 1 commit
- Merge branch 'master' into issue60 · f49a4317
  Valentina Galata authored May 17, 2022
  
  f49a4317
07 Apr, 2022 1 commit
- fix summarize_all_stats.R to have DB names · eb01ce8a
  Anna Buschart authored Apr 07, 2022
  
  eb01ce8a
25 Mar, 2022 2 commits
- correct axis label · 8b29c8db
  Anna Buschart authored Mar 25, 2022
  
  8b29c8db
- correct axis label · 21d4ad66
  Anna Buschart authored Mar 25, 2022
  
  21d4ad66
24 Feb, 2022 4 commits
- merge issue22 and mantis into master · e2bd927f
  Anna Heintz Buschart authored Feb 24, 2022
  
  e2bd927f
- include installation in wrapper · dc9f739d
  Anna Heintz Buschart authored Feb 24, 2022
  
  dc9f739d
- include installation in wrapper · f0cd77b0
  Anna Heintz Buschart authored Feb 24, 2022
  
  f0cd77b0
- feature counts and downstream analysis for mantis, submission to core-binding cluster · 63f3e62e
  Anna Heintz Buschart authored Feb 24, 2022
  
  63f3e62e
07 Feb, 2022 1 commit
- synch config names with install names, update fasta environment, change mantis... · 94298c4f
  Anna Heintz Buschart authored Feb 07, 2022
```
synch config names with install names, update fasta environment, change mantis command to conda mantis
```
  94298c4f
03 Feb, 2022 1 commit
- testing mantis install · c7dd2d5e
  Anna Heintz Buschart authored Feb 03, 2022
  
  c7dd2d5e
02 Feb, 2022 4 commits
- conflicting note · 6ae6c05e
  Anna Heintz Buschart authored Feb 02, 2022
  
  6ae6c05e
- conflicting note · cc187db0
  Anna Heintz Buschart authored Feb 02, 2022
  
  cc187db0
- configs · e6ec3c90
  Anna Heintz Buschart authored Feb 02, 2022
  
  e6ec3c90
- mantis: minor change in mantis_gff.py and comments in mantis.smk (issue #15 ) [ci skip] · 56d4fc0c
  Valentina Galata authored Feb 02, 2022
  
  56d4fc0c
20 Dec, 2021 1 commit
- Update installation.rst with conda directory · 6c8652e8
  Anna Buschart authored Dec 20, 2021
  
  6c8652e8
15 Dec, 2021 2 commits
- mantis: split rules into mult files; GFF script; updated rules (issue #15 ) [ci skip] · fe289c0e
  Valentina Galata authored Dec 15, 2021
  
  fe289c0e
- mantis: corrected main config (mantis paths, issue #15 ) [ci skip] · 2e8fccc3
  Valentina Galata authored Dec 15, 2021
  
  2e8fccc3
09 Dec, 2021 6 commits
- installation: mv mantis config rule to main workflow (issue #22 , #15 ) [skip ci] · c66e0fd4
  Valentina Galata authored Dec 09, 2021
  
  c66e0fd4
- installation: updated mantis rule (check_sql), bug fix in mantis config (issue #22 ) [skip ci] · f0ef9f13
  Valentina Galata authored Dec 09, 2021
  
  f0ef9f13
- installation: updated docs (installation, not finished; issue #22 ) [skip ci] · 51e2cb9c
  Valentina Galata authored Dec 09, 2021
  
  51e2cb9c
- overhaul: updated docs: main requirements (issue #39 ) [ci skip] · 32311de6
  Valentina Galata authored Sep 01, 2021
  
  32311de6
- overhaul: updated main requirements yaml (issue #39 ) [ci skip] · 03cdf9cb
  Valentina Galata authored Sep 01, 2021
  
  03cdf9cb
- overhaul: mv main requirements yaml (issue #39 ) [ci skip] · ed75e8c0
  Valentina Galata authored Sep 01, 2021
  
  ed75e8c0
08 Dec, 2021 13 commits
- installation: download_and_decompress.py: minor changes and improvements (issue #22 ) [skip ci] · aa378b81
  Valentina Galata authored Dec 08, 2021
  
  aa378b81
- installation: updated readme (issue #22 ) [skip ci] · 0c4d4f5b
  Valentina Galata authored Dec 08, 2021
  
  0c4d4f5b
- installation: changed/added threads in some rules (issue #22 ) [skip ci] · 7a795793
  Valentina Galata authored Dec 08, 2021
  
  7a795793
- mantis: added submodule from github (issue #15 ) [ci skip] · bfaeed45
  Valentina Galata authored Dec 08, 2021
  
  bfaeed45
- mantis: rm submodule (to be replaced, issue #15 ) [ci skip] · 1c1317a2
  Valentina Galata authored Dec 08, 2021
  
  1c1317a2
- mantis: updated mantis rules (issue #15 ) [ci skip] · 9f9aa3a6
  Valentina Galata authored Dec 08, 2021
  
  9f9aa3a6
- mantis: updated mantis conda yaml (issue #15 ) [ci skip] · 497f13bc
  Valentina Galata authored Dec 08, 2021
  
  497f13bc
- mantis: updated main config (issue #15 ) [ci skip] · f1455bab
  Valentina Galata authored Dec 08, 2021
  
  f1455bab
- mantis: renamed and updated mantis conda yaml (issue #15 ) [ci skip] · fad4cf0a
  Valentina Galata authored Dec 08, 2021
  
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- mantis: updated branch (merged with b6f9da0e , issue #15 ) [ci skip] · d0444f75
  Valentina Galata authored Dec 08, 2021
  
  d0444f75
- installation: mantis: added cores param for setup (issue #22 ) [skip ci] · 488b2946
  Valentina Galata authored Dec 08, 2021
  
  488b2946
- installation: updated readme (issue #22 ) [skip ci] · 24b1b2a0
  Valentina Galata authored Dec 08, 2021
  
  24b1b2a0
- installation: added mantis; minor changes in other files (issue #22 ) [skip ci] · ab8c81d0
  Valentina Galata authored Dec 08, 2021
  
  ab8c81d0
07 Dec, 2021 2 commits
- installation: minor correction in envs/utils.yaml (issue #22 ) [skip ci] · 2e283057
  Valentina Galata authored Dec 07, 2021
  
  2e283057
- installation: major changes: script for download/decompression; simplified... · d5d9ed61
  Valentina Galata authored Dec 07, 2021
```
installation: major changes: script for download/decompression; simplified config and workflow (issue #22) [skip ci]
```
  d5d9ed61