Commit 915224c2 authored by Shaman Narayanasamy's avatar Shaman Narayanasamy
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parent 61937dbc
#!/bin/bash -l
export PATH=$PATH:/home/snarayanasamy/Work/tools/metAMOS-1.5rc3/
OUTDIR="/mnt/md1200/snarayanasamy/metAmosAnalysis/CAMI_high"
date
initPipeline -1 /mnt/md1200/snarayanasamy/IMP_data/CAMI/High_Complexity_Dataset/HCTD.1.fq -2 /mnt/md1200/snarayanasamy/IMP_data/CAMI/High_Complexity_Dataset/HCTD.1.fq -d $OUTDIR -i 250:500,250:500
runPipeline -d $OUTDIR -p 8
date
#!/bin/bash -l
export PATH=$PATH:/home/snarayanasamy/Work/tools/metAMOS-1.5rc3/
OUTDIR="/mnt/md1200/snarayanasamy/metAmosAnalysis/CAMI_low"
date
initPipeline -1 /mnt/md1200/snarayanasamy/IMP_data/CAMI/Low_Complexity_Test_Dataset/LCTD.1.fq -2 /mnt/md1200/snarayanasamy/IMP_data/CAMI/Low_Complexity_Test_Dataset/LCTD.2.fq -d $OUTDIR -i 250:500,250:500
runPipeline -d $OUTDIR -p 8
date
#!/bin/bash -l
export PATH=$PATH:/home/snarayanasamy/Work/tools/metAMOS-1.5rc3/
OUTDIR="/mnt/md1200/snarayanasamy/metAmosAnalysis/CAMI_medium"
date
initPipeline -1 /mnt/md1200/snarayanasamy/IMP_data/CAMI/Medium_Complexity_Test_Dataset/MCTD.1.fq -2 /mnt/md1200/snarayanasamy/IMP_data/CAMI/Medium_Complexity_Test_Dataset/MCTD.2.fq -d $OUTDIR -i 250:500,250:500
runPipeline -d $OUTDIR -p 8
date
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