Commit 6154fc84 authored by Shaman Narayanasamy's avatar Shaman Narayanasamy
Browse files

Update readme

parent 35847d7c
The sample names used in the paper are named differently within the file
system:
1. The simulated mock (SM) community dataset is named either "simDat" or "simulated_data".
2. The human fecal (HF) community dataset is named X310763260.
3. The wastewater (WW) sludge community dataset is named A02.
1. The simulated mock (SM) community dataset
2. The human fecal (HF1-5) community datasets
3. The wastewater (WW1-4) sludge community datasets
4. The production scale anaerobic biogas (BG) reactor dataset
There are a total of six launcher scripts. Precisely, two (2) launcher scripts for each sample:
Two (2) commands are launched for each dataset
1. Running IMP on default mode (IDBA-UD assembler)
2. Running IMP using MEGAHIT assembler
......@@ -13,6 +14,6 @@ There are a total of six launcher scripts. Precisely, two (2) launcher scripts f
There are two different configuration files available within the "conf"
directory:
1. With the human genome derived sequence filtering, used for SM and HF.
1. Without the human genome derived sequence filtering, used for WW
1. With the human genome derived sequence filtering, used for SM and HF1-5
1. Without the human genome derived sequence filtering, used for WW1-4 and BG
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment