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README.md

-This repository contains the commands and scripts used for additonal
+This repository contains the commands and scripts used for additional
 analyses performed for the Integrated Meta-omic Pipelines (IMP) manuscript.
+
+There are five sub-directories within this repository:
+1. metAmos_command: Containing MetAMOS execution commands
+2. IMP_command: Commands for running IMP
+3. metaquast_analysis: The commands for running metaQUAST
+4. iterative_assembly: Scripts and execution for the MG and MT iterative assembly
+5. additional_analyses: Additional sub-directories containing scripts for data 
+   extraction, summary and visualizations. Descriptions available inside.