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This repository contains the commands and scripts used for additional
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analyses performed for the Integrated Meta-omic Pipelines (IMP) manuscript.
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There are five sub-directories within this repository:
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1. metAmos_commands: Containing MetAMOS execution commands
2. IMP_commands: Commands for running IMP
3. MOCAT_analysis Commands for running MOCAT
4. metaquast_analysis: The commands for running metaQUAST
5. iterative_assembly: Scripts and execution for the MG and MT iterative assembly
6. additional_analyses: Additional sub-directories containing scripts for data 
   extraction, summary and visualizations. Descriptions available inside each of the directories
7. prodigal_analysis: Some additional analyses performed with prodigal