Commit 28a829b5 authored by Yohan Jarosz's avatar Yohan Jarosz

adding today dependencies for R genomeInterval

parent 84dbd21f
Pipeline #1723 failed with stages
in 2 minutes and 10 seconds
......@@ -39,7 +39,7 @@ RUN mkdir /home/imp/lib/.checkpoint \
&& echo "r <- getOption('repos'); r['CRAN'] <- 'https://cloud.r-project.org/'; options(repos = r);" > /home/imp/.Rprofile \
&& Rscript -e "install.packages('checkpoint', repos='https://cloud.r-project.org/')" \
&& Rscript -e "library(checkpoint);checkpoint('2016-06-20', checkpointLocation='/home/imp/lib', project='/home/imp/lib')" \
&& Rscript -e "source('http://bioconductor.org/biocLite.R');biocLite('genomeIntervals')"\
&& Rscript -e "source('http://bioconductor.org/biocLite.R');biocLite('genomeIntervals', dependencies=TRUE)" \
&& chmod -R 777 /home/imp/lib/.checkpoint /home/imp/.Rprofile
......
......@@ -44,6 +44,7 @@ RUN apt-get update \
RUN apt-get update \
&& apt-get install -yq r-base r-base-dev \
&& libcurl4-openssl-dev libssl-dev \
&& apt-get install -yq libncurses5 libncurses5-dev sudo libatlas-base-dev python2.7 gfortran python-dev \
&& apt-get install -yq python-matplotlib \
&& update-alternatives --set java /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java \
......
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