Issues · IMP / IMP · GitLab

IMP-specific prokka conda recipe needed

#141 · opened Oct 02, 2018 by Cedric Laczny Important conda
- 1
updated Oct 04, 2018
Why are Fasta index and BAM index not created by distinct rules, but in the variant_calling rule?

#140 · opened Oct 01, 2018 by Cedric Laczny Important bug
- 1
updated Oct 01, 2018
samtools-1.9 might break host filtering step

#137 · opened Sep 21, 2018 by Cedric Laczny Important Update
- 4
updated Oct 08, 2018
megahit iterations: 99-25=74 modulo 4 is 2 and not 0

#105 · opened Jul 06, 2017 by Patrick May Enhancement Important Update
- 1
updated Oct 04, 2017
Custom screening does not work well for launching in batches

#91 · opened Apr 03, 2017 by Shaman Narayanasamy Important Urgent
- CLOSED
- 2
updated Aug 27, 2019
Metaquast not working

#79 · opened Nov 11, 2016 by Shaman Narayanasamy Important bug
- 0
updated Nov 10, 2017
Tracking outreach

#64 · opened Feb 15, 2016 by Cedric Laczny Important
- CLOSED
- 1
- 1
updated Feb 09, 2018
R script reading of GFF files

#63 · opened Dec 09, 2015 by Shaman Narayanasamy Important bug
- CLOSED
- 1
updated Feb 09, 2018
IMP execution outside of code directory

#60 · opened Oct 28, 2015 by Shaman Narayanasamy Enhancement Important Potential request Update
- CLOSED
- 8
updated Feb 09, 2018
Work on snakemake step names

#58 · opened Sep 29, 2015 by Shaman Narayanasamy Enhancement Important
- CLOSED
- 1
updated Feb 09, 2018
Update MEGAHIT

#56 · opened Sep 28, 2015 by Shaman Narayanasamy Important Update Urgent
- CLOSED
- 2
updated Feb 09, 2018
R migrate functions

#49 · opened Aug 25, 2015 by Shaman Narayanasamy Enhancement Important
- CLOSED
- 0
updated Feb 09, 2018
MG detuplication step not appearing in snakemake stdout.

#48 · opened Aug 24, 2015 by Shaman Narayanasamy Important Urgent bug
- CLOSED
- 7
updated Feb 09, 2018
Changing ownership of files within docker

#45 · opened Aug 18, 2015 by Shaman Narayanasamy Enhancement Important
- CLOSED
- 8
updated Feb 09, 2018
Human sequence filtering sensitivity

#42 · opened Jul 24, 2015 by Shaman Narayanasamy Important Urgent
- CLOSED
- 1
updated Feb 09, 2018
INDEX_FASTA_FILE: must go in init

#40 · opened Jul 17, 2015 by Yohan Jarosz Important
- CLOSED
- 2
updated Feb 09, 2018
different processces can access db at the same time

#37 · opened Jul 16, 2015 by Yohan Jarosz Important bug
- CLOSED
- 1
updated Feb 09, 2018
At initializing, IMP download some databases and tools over the network. Sometimes it fails.

#35 · opened Jul 16, 2015 by Yohan Jarosz Important
- CLOSED
- 2
updated Feb 09, 2018
By default, human filetring si set on chr21

#34 · opened Jul 16, 2015 by Yohan Jarosz Important
- CLOSED
- 2
updated Feb 09, 2018
IMP on bigbug

#32 · opened Jul 07, 2015 by Shaman Narayanasamy Important Urgent
- CLOSED
- 2
updated Feb 09, 2018