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  • IMP
  • Issues

  • Open 5
  • Closed 22
  • All 27
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Weight
  • IMP-specific prokka conda recipe needed
    #141 · opened Oct 02, 2018 by Cedric Laczny   Important conda
    • 1
    updated Oct 04, 2018
  • Why are Fasta index and BAM index not created by distinct rules, but in the variant_calling rule?
    #140 · opened Oct 01, 2018 by Cedric Laczny   Important bug
    • 1
    updated Oct 01, 2018
  • samtools-1.9 might break host filtering step
    #137 · opened Sep 21, 2018 by Cedric Laczny   Important Update
    • 4
    updated Oct 08, 2018
  • megahit iterations: 99-25=74 modulo 4 is 2 and not 0
    #105 · opened Jul 06, 2017 by Patrick May   Enhancement Important Update
    • 1
    updated Oct 04, 2017
  • Custom screening does not work well for launching in batches
    #91 · opened Apr 03, 2017 by Shaman Narayanasamy   Important Urgent
    • CLOSED
    • 2
    updated Aug 27, 2019
  • Metaquast not working
    #79 · opened Nov 11, 2016 by Shaman Narayanasamy   Important bug
    • 0
    updated Nov 10, 2017
  • Tracking outreach
    #64 · opened Feb 15, 2016 by Cedric Laczny   Important
    • CLOSED
    • 1
    • 1
    updated Feb 09, 2018
  • R script reading of GFF files
    #63 · opened Dec 09, 2015 by Shaman Narayanasamy   Important bug
    • CLOSED
    • 1
    updated Feb 09, 2018
  • IMP execution outside of code directory
    #60 · opened Oct 28, 2015 by Shaman Narayanasamy   Enhancement Important Potential request Update
    • CLOSED
    • 8
    updated Feb 09, 2018
  • Work on snakemake step names
    #58 · opened Sep 29, 2015 by Shaman Narayanasamy   Enhancement Important
    • CLOSED
    • 1
    updated Feb 09, 2018
  • Update MEGAHIT
    #56 · opened Sep 28, 2015 by Shaman Narayanasamy   Important Update Urgent
    • CLOSED
    • 2
    updated Feb 09, 2018
  • R migrate functions
    #49 · opened Aug 25, 2015 by Shaman Narayanasamy   Enhancement Important
    • CLOSED
    • 0
    updated Feb 09, 2018
  • MG detuplication step not appearing in snakemake stdout.
    #48 · opened Aug 24, 2015 by Shaman Narayanasamy   Important Urgent bug
    • CLOSED
    • 7
    updated Feb 09, 2018
  • Changing ownership of files within docker
    #45 · opened Aug 18, 2015 by Shaman Narayanasamy   Enhancement Important
    • CLOSED
    • 8
    updated Feb 09, 2018
  • Human sequence filtering sensitivity
    #42 · opened Jul 24, 2015 by Shaman Narayanasamy   Important Urgent
    • CLOSED
    • 1
    updated Feb 09, 2018
  • INDEX_FASTA_FILE: must go in init
    #40 · opened Jul 17, 2015 by Yohan Jarosz   Important
    • CLOSED
    • 2
    updated Feb 09, 2018
  • different processces can access db at the same time
    #37 · opened Jul 16, 2015 by Yohan Jarosz   Important bug
    • CLOSED
    • 1
    updated Feb 09, 2018
  • At initializing, IMP download some databases and tools over the network. Sometimes it fails.
    #35 · opened Jul 16, 2015 by Yohan Jarosz   Important
    • CLOSED
    • 2
    updated Feb 09, 2018
  • By default, human filetring si set on chr21
    #34 · opened Jul 16, 2015 by Yohan Jarosz   Important
    • CLOSED
    • 2
    updated Feb 09, 2018
  • IMP on bigbug
    #32 · opened Jul 07, 2015 by Shaman Narayanasamy   Important Urgent
    • CLOSED
    • 2
    updated Feb 09, 2018
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