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  • IMP
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  • #83

Closed
Open
Created Dec 20, 2016 by castualwang@skywang

impy init

root@skywang:~# impy init
[x] Found IMP docker-r3lab.uni.lu/imp/imp 1.4
IMP image found
Executing IMP command:
    docker run --rm --name root_imp_db -v /root/imp-db:/home/imp/databases -e "LOCAL_USER_ID=`id -u $USER`" -e "LOCAL_GROUP_ID=`id -g $USER`"  docker-r3lab.uni.lu/imp/imp:1.4 snakemake -s /home/imp/code/rules/ini/init
    

usermod: UID '0' already exists
groupmod: GID '0' already exists
Traceback (most recent call last):
  File "/usr/local/lib/python3.4/dist-packages/snakemake/__init__.py", line 399, in snakemake
    no_hooks=no_hooks)
  File "/usr/local/lib/python3.4/dist-packages/snakemake/workflow.py", line 301, in execute
    list_params_changes)
  File "/usr/local/lib/python3.4/dist-packages/snakemake/persistence.py", line 24, in __init__
    os.mkdir(self.path)
PermissionError: [Errno 13] Permission denied: '/home/imp/databases/.snakemake'
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