Initialization problems
@yjarosz and @shaman.narayanasamy ,
I have the following issues when running impy init
on Ubuntu 16.04
:
-
Download of
hg38.tgz
is constantly stuck. Would be nice to have the code recognize that there is already the filehg38.tgz
present when downloaded separately. -
Once the download passed, following traceback error appeared:
(envImpy) ➜ imp-db impy init [15:32:23]
[x] Found IMP docker-r3lab.uni.lu/imp/imp 1.4
[x] Downloading IMP databases 'https://webdav-r3lab.uni.lu/public/R3lab/IMP/db/hg38.tgz' to '/home/laurent/imp-db/db.tgz'
100.0% 6333071005 / 6333000000
[x] Extracting to /home/laurent/imp-db/imp-db
[x] Removing tmp file: /home/laurent/imp-db/db.tgz
Traceback (most recent call last):
File "/home/laurent/.linuxbrew/bin/impy", line 11, in <module>
sys.exit(cli())
File "/home/laurent/.local/lib/python3.5/site-packages/click/core.py", line 716, in __call__
return self.main(*args, **kwargs)
File "/home/laurent/.local/lib/python3.5/site-packages/click/core.py", line 696, in main
rv = self.invoke(ctx)
File "/home/laurent/.local/lib/python3.5/site-packages/click/core.py", line 1060, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/laurent/.local/lib/python3.5/site-packages/click/core.py", line 889, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/laurent/.local/lib/python3.5/site-packages/click/core.py", line 534, in invoke
return callback(*args, **kwargs)
File "/home/laurent/.local/lib/python3.5/site-packages/click/decorators.py", line 17, in new_func
return f(get_current_context(), *args, **kwargs)
File "/home/laurent/.linuxbrew/opt/python3/lib/python3.5/site-packages/impy.py", line 384, in init
shutil.remove(tmp)