Fast MGMT assembly option using MEGAHIT
Since, the refactoring of the pipeline in it's entirity into Snakemake
, it is rather easy to add modules. Therefore I added some rules that will enable a fast option: 14b56d1b
Note that while individual steps already work, it has not been incorporated into the core workflow as this will be an option. This is not a priority, and can be incorporated towards the end.