Sortmerna index db issue
Index of rRNA database (sortmerna
) not working. Somehow not recognizing the DBPATH
...
CalledProcessError in line 93 of /home/imp/integrated-metaomic-pipeline/rules/Util.rules:
Command 'indexdb_rna --ref db/sortmerna/rfam-5.8s-database-id98.fasta,{DBPATH}/sortmerna/idx/rfam-5.8s-database-id98:db/sortmerna/silva-arc-16s-id95.fasta,{DBPATH}/sortmerna/idx/silva-arc-16s-id95:db/sortmerna/silva-bac-16s-id90.fasta,{DBPATH}/sortmerna/idx/silva-bac-16s-id90:db/sortmerna/silva-euk-18s-id95.fasta,{DBPATH}/sortmerna/idx/silva-euk-18s-id95:db/sortmerna/rfam-5s-database-id98.fasta,{DBPATH}/sortmerna/idx/rfam-5s-database-id98:db/sortmerna/silva-arc-23s-id98.fasta,{DBPATH}/sortmerna/idx/silva-arc-23s-id98:db/sortmerna/silva-bac-23s-id98.fasta,{DBPATH}/sortmerna/idx/silva-bac-23s-id98:db/sortmerna/silva-euk-28s-id98.fasta,{DBPATH}/sortmerna/idx/silva-euk-28s-id98 --fast > build/Util/Util.log 2>&1' returned non-zero exit status 1