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  • #135

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Opened Aug 14, 2018 by Cedric Laczny@cedric.laczny
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Read preprocessing using fastp

Maybe fastp could be integrated as a preprocessing step. According to its documentation is is (supposedly)

like FASTQC but faster and more informative

and it integrates trimming etc. while automatically detecting the adapters as well as

trim polyG in 3' ends, which is commonly seen in NovaSeq/NextSeq data

Edited Aug 14, 2018 by Cedric Laczny

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Reference: IMP/IMP#135