Creation of db directory when help invoked
IMP creates a imp-db
when the impy run --help
is called.
For example, this folder has the following files:
$ lt
total 8.0K
-rwxrwxrwx 1 snarayanasamy bioecosystem 135 Apr 3 14:38 config.unibo.json
-rwxr-xr-x 1 snarayanasamy bioecosystem 100 Aug 22 11:13 config.lao_rep2.json
Now, when the command is called:
$ impy run --help
Usage: impy run [OPTIONS]
Run IMP workflow
Options:
-m, --metagenomic TEXT Path to the Metagenomic files.
-t, --metranscriptomic TEXT Path to the Metatranscriptomic files.
-o, --output-directory TEXT Output directory.
--single-omics Activate single omics mode.
--screen TEXT Fasta file path to use for filtering.
--no-filtering Skip filtering.
-x, --execute TEXT Command to execute.
-h, --help Show this message and exit.
I list the files again:
$ lt
total 8.0K
-rwxrwxrwx 1 snarayanasamy bioecosystem 135 Apr 3 14:38 config.unibo.json
-rwxr-xr-x 1 snarayanasamy bioecosystem 100 Aug 22 11:13 config.lao_rep2.json
drwxr-xr-x 2 snarayanasamy bioecosystem 10 Aug 22 11:27 imp-db
Not sure if this is an issue with the impy
script.
-Shaman-