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  • #104

Closed
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Opened Jul 01, 2017 by jingzhejiang@jingzhejiang
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MissingInputException

Hi! I have installed and finished 'impy init' on AWS instance, then save it as a AMI. when I start a new instance (c4.8*large) with this AMI, and run:

impy run -t DYL1.fq.gz -t DYL2.fq.gz -o ~/DYL-IMP-default-Output --single-omics

Executing IMP command:
    docker run --rm --name home_ubuntu_DYL_IMP_default_Output -v /home/ubuntu/DYL-rawdata/imp-db:/home/imp/databases -v /home/ubuntu/DYL-IMP-default-Output:/home/imp/output -v /home/ubuntu/DYL-rawdata:/home/imp/data -e "LOCAL_USER_ID=`id -u $USER`" -e "LOCAL_GROUP_ID=`id -g $USER`"  -e IMP_BINNING_METHOD="maxbin"  -e MEMTOTAL="8"  -e MEMCORE="2"  -e THREADS="4"  -e MG=""  -e MT="/home/imp/data/DYL1.fq.gz /home/imp/data/DYL2.fq.gz"  -e IMP_ASSEMBLER="idba"  -e IMP_STEPS="preprocessing assembly analysis binning report"  docker-r3lab.uni.lu/imp/imp:1.4.1 snakemake -s /home/imp/code/Snakefile
    
usermod: no changes
MissingInputException in line 1 of /home/imp/code/rules/Preprocessing/trimming.rules:
Missing input files for rule trimming:
/home/imp/databases/adapters/adapters.done

What is the problem?

Thank you!

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Reference: IMP/IMP#104