MissingInputException
Hi! I have installed and finished 'impy init' on AWS instance, then save it as a AMI. when I start a new instance (c4.8*large) with this AMI, and run:
impy run -t DYL1.fq.gz -t DYL2.fq.gz -o ~/DYL-IMP-default-Output --single-omics
Executing IMP command:
docker run --rm --name home_ubuntu_DYL_IMP_default_Output -v /home/ubuntu/DYL-rawdata/imp-db:/home/imp/databases -v /home/ubuntu/DYL-IMP-default-Output:/home/imp/output -v /home/ubuntu/DYL-rawdata:/home/imp/data -e "LOCAL_USER_ID=`id -u $USER`" -e "LOCAL_GROUP_ID=`id -g $USER`" -e IMP_BINNING_METHOD="maxbin" -e MEMTOTAL="8" -e MEMCORE="2" -e THREADS="4" -e MG="" -e MT="/home/imp/data/DYL1.fq.gz /home/imp/data/DYL2.fq.gz" -e IMP_ASSEMBLER="idba" -e IMP_STEPS="preprocessing assembly analysis binning report" docker-r3lab.uni.lu/imp/imp:1.4.1 snakemake -s /home/imp/code/Snakefile
usermod: no changes
MissingInputException in line 1 of /home/imp/code/rules/Preprocessing/trimming.rules:
Missing input files for rule trimming:
/home/imp/databases/adapters/adapters.doneWhat is the problem?
Thank you!