IMP issues
https://git-r3lab.uni.lu/IMP/IMP/-/issues
2017-05-31T09:51:20+02:00
https://git-r3lab.uni.lu/IMP/IMP/-/issues/85
Error in job vizbin
2017-05-31T09:51:20+02:00
castualwang
Error in job vizbin
```
2016-12-28 09:00:05,501 DEBUG [Thread-0] (DataSetUtils.java:267) - Running command: "/home/imp/.vizbin/pbh_tsne" in directory: /tmp/map5777724847260661210
Number of threads: 1
Seed: 0
2016-12-28 09:00:05,519 DEBUG [TSNERunner] (D...
```
2016-12-28 09:00:05,501 DEBUG [Thread-0] (DataSetUtils.java:267) - Running command: "/home/imp/.vizbin/pbh_tsne" in directory: /tmp/map5777724847260661210
Number of threads: 1
Seed: 0
2016-12-28 09:00:05,519 DEBUG [TSNERunner] (DataSetUtils.java:301) - TSNE: Read the 75 x 50 data matrix successfully!
2016-12-28 09:00:05,520 DEBUG [TSNERunner] (DataSetUtils.java:301) - TSNE: Running BH_TSNE with 1 threads and seed = 0
2016-12-28 09:00:05,520 DEBUG [TSNERunner] (DataSetUtils.java:301) - TSNE: Perplexity too large for the number of data points!
java.io.FileNotFoundException: points.txt file not found. Probably bh_tsne binaries execution failed.
at lu.uni.lcsb.vizbin.ProcessInput$2.run(ProcessInput.java:152)
2016-12-28 09:00:05,522 DEBUG [Thread-0] (ProcessInput.java:75) - Error! Check the logs.
2016-12-28 09:00:05,523 DEBUG [AWT-EventQueue-0] (ProcessInput.java:91) - [PROGRESS BAR] Error! Check the logs. (35)
2016-12-28 09:00:05,523 ERROR [Thread-0] (ProcessInput.java:221) - points.txt file not found. Probably bh_tsne binaries execution failed.
java.io.FileNotFoundException: points.txt file not found. Probably bh_tsne binaries execution failed.
at lu.uni.lcsb.vizbin.ProcessInput$2.run(ProcessInput.java:152)
2016-12-28 09:00:05,526 DEBUG [Thread-0] (ObjectWithProperties.java:33) - Property changed: FINISHED. Old: false New: true
Waiting at most 5 seconds for missing files.
Error in job vizbin while creating output files Analysis/mgmt.vizbin.filtered.fa, Analysis/mgmt.vizbin.with-contig-names.points.
MissingOutputException in line 1 of /home/imp/code/rules/Analysis/vizbin.rule:
Missing files after 5 seconds:
Analysis/mgmt.vizbin.with-contig-names.points
Removing output files of failed job vizbin since they might be corrupted:
Analysis/mgmt.vizbin.filtered.fa
Will exit after finishing currently running jobs.
Exiting because a job execution failed. Look above for error message
```