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Commit 29c183b5 authored by Yohan Jarosz's avatar Yohan Jarosz
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fix test to reflext no binning

parent 2ab3380e
Pipeline #1546 failed with stages
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              .gitlab-ci.yml
              View file @ 29c183b5
              ...@@ -92,18 +92,18 @@ dag-mt-nf2: ...@@ -92,18 +92,18 @@ dag-mt-nf2:
              dag-mgmt-no-binning: dag-mgmt-no-binning:
              stage: dag stage: dag
              script: script:
              - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db --no-binning run -m $CI_PROJECT_DIR/test/MG.R1.small.fq -m $CI_PROJECT_DIR/test/MG.R2.small.fq -t $CI_PROJECT_DIR/test/MT.R1.small.fq -t $CI_PROJECT_DIR/test/MT.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID -x "snakemake -n" - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db -b no run -m $CI_PROJECT_DIR/test/MG.R1.small.fq -m $CI_PROJECT_DIR/test/MG.R2.small.fq -t $CI_PROJECT_DIR/test/MT.R1.small.fq -t $CI_PROJECT_DIR/test/MT.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID -x "snakemake -n"
              dag-mt-no-binning: dag-mt-no-binning:
              stage: dag stage: dag
              script: script:
              - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db --no-binning run -t $CI_PROJECT_DIR/test/MT.R1.small.fq -t $CI_PROJECT_DIR/test/MT.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID --single-omics -x "snakemake -n" - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db -b no run -t $CI_PROJECT_DIR/test/MT.R1.small.fq -t $CI_PROJECT_DIR/test/MT.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID --single-omics -x "snakemake -n"
              dag-mg-no-binning: dag-mg-no-binning:
              stage: dag stage: dag
              script: script:
              - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db --no-binning run -m $CI_PROJECT_DIR/test/MG.R1.small.fq -m $CI_PROJECT_DIR/test/MG.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID --single-omics -x "snakemake -n" - impy -s . -c $CI_PROJECT_DIR/test/default.conf.json -d /mnt/data/db -b no run -m $CI_PROJECT_DIR/test/MG.R1.small.fq -m $CI_PROJECT_DIR/test/MG.R2.small.fq -o $CI_PROJECT_DIR/$CI_BUILD_ID --single-omics -x "snakemake -n"
              # PREPROCESSING # PREPROCESSING
              ......
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