Pipeline · Fractalis / fractalis

fixing ci

3 jobs for beta in 17 minutes and 7 seconds (queued for 2 seconds)

Name Stage Failure

	Name	Stage	Failure
failed	test	Test
	File "/usr/lib/python3.6/site-packages/fractalis/utils.py", line 17, in import_module_by_abs_path spec.loader.exec_module(module) File "/usr/lib/python3.6/site-packages/fractalis/analytics/tasks/shared/array_stats.py", line 16, in <module> importr('DESeq2') File "/usr/lib64/python3.6/site-packages/rpy2/robjects/packages.py", line 453, in importr env = _get_namespace(rname) rpy2.rinterface.RRuntimeError: Error in loadNamespace(name) : there is no package called 'DESeq2' ERROR: Job failed: exit code 1

failed

Test

  File "/usr/lib/python3.6/site-packages/fractalis/utils.py", line 17, in import_module_by_abs_path
    spec.loader.exec_module(module)
  File "/usr/lib/python3.6/site-packages/fractalis/analytics/tasks/shared/array_stats.py", line 16, in <module>
    importr('DESeq2')
  File "/usr/lib64/python3.6/site-packages/rpy2/robjects/packages.py", line 453, in importr
    env = _get_namespace(rname)
rpy2.rinterface.RRuntimeError: Error in loadNamespace(name) : there is no package called 'DESeq2'

ERROR: Job failed: exit code 1