tests and bugfixes

3 jobs for beta in 2 minutes and 48 seconds (queued for 1 second)
Status Name Job ID Coverage
  Build Sdist
passed build:sdist #28119


  Build Image
failed build:image #28120


skipped test #28121
Name Stage Failure
build:image Build Image

ERROR: dependencies 'S4Vectors', 'IRanges', 'GenomicRanges', 'SummarizedExperiment', 'BiocGenerics', 'Biobase', 'BiocParallel', 'genefilter', 'locfit', 'geneplotter', 'ggplot2', 'Hmisc', 'Rcpp', 'RcppArmadillo' are not available for package 'DESeq2'
* removing '/usr/lib64/R/library/DESeq2'
Warning in file.create(f.tg) :
cannot create file '/usr/share/doc/R-3.5.0/html/packages.html', reason 'No such file or directory'
Warning in utils::make.packages.html(.Library, docdir = R.home("doc")) :
cannot update HTML package index
The command '/bin/sh -c mkdir /app/ && rm -f /etc/yum.repos.d/* && printf "[lcsb-epel]\nname=LCSB epel Repo\nbaseurl=http://lcsb-cent-mirr-server.uni.lu/epel/7/x86_64/\nenabled=1" > /etc/yum.repos.d/lcsb-epel.repo && printf "[lcsb-updates]\nname=LCSB Updates Repo\nbaseurl=http://lcsb-cent-mirr-server.uni.lu/CentOS/7/updates/x86_64/\nenabled=1" > /etc/yum.repos.d/lcsb-updates.repo && printf "[lcsb-extras]\nname=LCSB Extras Repo\nbaseurl=http://lcsb-cent-mirr-server.uni.lu/CentOS/7/extras/x86_64/\nenabled=1" > /etc/yum.repos.d/lcsb-extras.repo && printf "[lcsb-base]\nname=LCSB Base Repo\nbaseurl=http://lcsb-cent-mirr-server.uni.lu/CentOS/7/os/x86_64/\nenabled=1" > /etc/yum.repos.d/lcsb-base.repo && rm -rf /var/cache/yum && yum clean all && yum install --nogpg -y python34 python34-pip python34-devel readline-devel R wget && wget https://bioconductor.org/packages/release/bioc/src/contrib/limma_3.36.1.tar.gz && wget https://bioconductor.org/packages/release/bioc/src/contrib/DESeq2_1.20.0.tar.gz && R CMD INSTALL limma_*.tar.gz DESeq2_*.tar.gz && rm limma_*.tar.gz DESeq2_*.tar.gz' returned a non-zero code: 1
ERROR: Job failed: exit code 1