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Fractalis
fractalis
Commits
cd730a6f
Commit
cd730a6f
authored
Jun 19, 2018
by
Sascha Herzinger
Browse files
Fixing tests
parent
5dbc8a1c
Pipeline
#5444
failed with stages
in 37 minutes and 17 seconds
Changes
2
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
fractalis/analytics/tasks/heatmap/main.py
View file @
cd730a6f
...
...
@@ -57,10 +57,13 @@ class HeatmapTask(AnalyticTask):
for
i
in
range
(
df
.
shape
[
0
])]
z_df
=
pd
.
DataFrame
(
z_df
,
columns
=
df
.
columns
,
index
=
df
.
index
)
method
=
'limma'
if
ranking_method
in
[
'mean'
,
'median'
,
'variance'
]:
method
=
ranking_method
# compute statistic for ranking
stats
=
array_stats
.
get_stats
(
df
=
df
,
subsets
=
subsets
,
params
=
params
,
ranking_method
=
ranking_
method
)
ranking_method
=
method
)
# sort by ranking_value
self
.
sort
(
df
,
stats
[
ranking_method
],
ranking_method
)
...
...
tests/unit/analytics/boxplot/test_boxplot.py
View file @
cd730a6f
...
...
@@ -21,6 +21,7 @@ class TestBoxplotAnalytics:
[
104
,
'bar'
,
4
]],
columns
=
[
'id'
,
'feature'
,
'value'
])
results
=
self
.
task
.
main
(
features
=
[
df_1
,
df_2
],
transformation
=
'identity'
,
categories
=
[],
id_filter
=
[],
subsets
=
[])
...
...
@@ -54,6 +55,7 @@ class TestBoxplotAnalytics:
[
204
,
'bar'
,
100
]],
columns
=
[
'id'
,
'feature'
,
'value'
])
results
=
self
.
task
.
main
(
features
=
[
df_1
,
df_2
],
categories
=
[],
transformation
=
'identity'
,
id_filter
=
[],
subsets
=
[])
df
=
pd
.
DataFrame
.
from_dict
(
json
.
loads
(
results
[
'data'
]))
assert
np
.
all
(
df
[
'outlier'
]
==
[
True
,
False
,
False
,
False
,
True
,
...
...
@@ -67,6 +69,7 @@ class TestBoxplotAnalytics:
[
104
,
'foo'
,
100
]],
columns
=
[
'id'
,
'feature'
,
'value'
])
results
=
self
.
task
.
main
(
features
=
[
df
],
categories
=
[],
transformation
=
'identity'
,
id_filter
=
[],
subsets
=
[])
assert
results
[
'statistics'
][
'foo////s1'
][
'median'
]
==
2
...
...
@@ -86,6 +89,7 @@ class TestBoxplotAnalytics:
[
105
,
'gender'
,
'male'
]],
columns
=
[
'id'
,
'feature'
,
'value'
])
results
=
self
.
task
.
main
(
features
=
[
df
],
categories
=
[
categories
],
transformation
=
'identity'
,
id_filter
=
[],
subsets
=
[])
assert
'foo//female//s1'
in
results
[
'statistics'
]
assert
'foo//male//s1'
not
in
results
[
'statistics'
]
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