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Fractalis
fractalis
Commits
c7bd8897
Commit
c7bd8897
authored
Jun 13, 2018
by
Sascha Herzinger
Browse files
added label to survival analysis output
parent
2ca68ea6
Pipeline
#5377
failed with stages
in 2 minutes and 47 seconds
Changes
2
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
fractalis/analytics/tasks/survival/main.py
View file @
c7bd8897
...
...
@@ -93,6 +93,7 @@ class SurvivalTask(AnalyticTask):
}
return
{
'label'
:
df
[
'feature'
].
tolist
()[
0
],
'categories'
:
categories
,
'subsets'
:
subsets
,
'stats'
:
stats
...
...
tests/unit/analytics/survival/test_main.py
View file @
c7bd8897
...
...
@@ -21,6 +21,7 @@ class TestSurvivalTask:
estimator
=
'KaplanMeier'
,
id_filter
=
[],
subsets
=
[])
assert
results
[
'label'
]
==
'duration'
assert
results
[
'stats'
][
''
][
0
][
'timeline'
]
assert
results
[
'stats'
][
''
][
0
][
'estimate'
]
assert
results
[
'stats'
][
''
][
0
][
'ci_lower'
]
...
...
@@ -42,6 +43,7 @@ class TestSurvivalTask:
estimator
=
'NelsonAalen'
,
id_filter
=
[],
subsets
=
[])
assert
results
==
'duration'
assert
results
[
'stats'
][
'control'
][
0
][
'timeline'
]
assert
results
[
'stats'
][
'control'
][
0
][
'estimate'
]
assert
results
[
'stats'
][
'control'
][
0
][
'ci_lower'
]
...
...
@@ -52,6 +54,7 @@ class TestSurvivalTask:
assert
results
[
'stats'
][
'miR-137'
][
0
][
'ci_upper'
]
def
test_can_handle_nans
(
self
):
assert
False
# FIXME: NA should not be filtered out but be censored
df
=
load_waltons
()
df
.
insert
(
0
,
'id'
,
df
.
index
)
duration
=
df
[[
'id'
,
'T'
]].
copy
()
...
...
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