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Commit b902414f authored by Sascha Herzinger's avatar Sascha Herzinger
Browse files

improved demo page

parent bd11feca
......@@ -2,34 +2,73 @@
<meta charset="UTF-8">
<head>
<script src="fractal-0.6.0.min.js"></script>
<script src="http://localhost:8080/fractal.js"></script>
</head>
<body>
<h1>Fractalis Test Page</h1>
<p>
<div class="introduction">
<h1>Fractalis Demo Page</h1>
This page is for demonstration and educational purpose only!
Please go to <a href="https://fractalis.lcsb.uni.lu/">https://fractalis.lcsb.uni.lu/</a> for more information.
</p>
<h2>How to use this page:</h2>
<input type="button" onclick="loadData()" value="Prepare data for analysis"/>
<input type="button" onclick="deleteData()" value="Clear analysis cache"/>
<p>
1. Click the "Prepare data" button to prepare data here ↑<br/>
2. Interact with the control panel and select variables of interest here →<br/>
3. Interact with the charts here ↓<br/>
</p>
<br/>
<br/>
<br/>
<br/>
<table class="do-table">
<tr>
<td><b>Do</b></td>
<td><b>Don't</b></td>
</tr>
<tr>
<td>Get an idea about what functionality Fractalis offers</td>
<td>Attempt to use this page for analysing your own data</td>
</tr>
<tr>
<td>Learn about the API of the front-end library</td>
<td>Copy the code 1:1 into your own application</td>
</tr>
<tr>
<td>Go <a href="https://git-r3lab.uni.lu/Fractalis/fractalis/blob/master/README.md#add-support-for-new-services">here</a> to learn how to add support for your own service</td>
<td>Wait for someone else to do it. It's really simple!</td>
</tr>
<tr>
<td>Ask questions: <a href="mailto:sascha.herzinger@uni.lu">Contact</a></td>
<td>Be shy!</td>
</tr>
</table>
<h2>What you can do on this page</h2>
<p>
You have come here to see what Fractalis can do, so we prepared the
<a href="https://portal.gdc.cancer.gov/repository">TCGA - COAD</a> study for you to experiment with the available analytics.
The two groups that have been pre-selected are: early stage cancer vs. late stage cancer.
We recommend you have a look at the videos <a href="https://www.youtube.com/playlist?list=PLNvp9GB9uBmH1NNAf-qTyj_jN2aCPISFU">here</a>
to learn how these tools are used.
</p>
<h2>To get started</h2>
<p>
1. Add one or more charts you want to see from the --Select Chart-- field below.<br/>
2. You will see a control panel on the right without variables, because no data have been loaded yet.<br/>
3. Click the "Prepare analysis cache" button and wait for the variables become available.<br/>
4. Select parameters and variables to run an analysis.<br/>
</p>
<div class="controls">
<select id="chart-select">
<option selected disabled>-- Select Chart --</option>
<option value="scatterplot">Scatterplot</option>
<option value="boxplot">Boxplot</option>
<option value="heatmap">Heatmap</option>
<option value="pca">PCA</option>
<option value="survivalplot">Survivalplot</option>
<option value="volcanoplot">Volcanoplot</option>
</select>
<input type="button" value="Add Chart" onclick="addChart()"/>
<label>
Zoom:
<input id="chart-size-range" type="range" min="10" max="100" value="30" oninput="setChartSize(this.value)"/>
</label>
<input type="button" onclick="loadData()" value="Prepare analysis cache"/>
<input type="button" onclick="deleteData()" value="Clear analysis cache"/>
</div>
</div>
<div class="charts">
<div class="chart chart-1"></div>
<div class="chart chart-2"></div>
<div class="chart chart-3"></div>
<div class="chart chart-4"></div>
<div class="chart chart-5"></div>
<div class="chart chart-6"></div>
<div class="chart chart-7"></div>
<div class="chart chart-8"></div>
</div>
</body>
......@@ -38,7 +77,7 @@
/* eslint-disable */
const fjs = fractal.init({
handler: 'demo',
handler: 'demo_tcga_coad',
dataSource: location.protocol + '//' + window.location.host,
fractalisNode: location.protocol + '//' + window.location.host,
getAuth () {
......@@ -50,94 +89,94 @@
}
})
fjs.setSubsets([])
function deleteData () {
fjs.clearCache()
}
let chartSize = '30vw'
function setChartSize (value) {
chartSize = value + 'vw'
Array.prototype.forEach.call(document.querySelectorAll('.charts > div'), chart => {
chart.style.height = chartSize
chart.style.width = chartSize
})
}
function addChart () {
const chart = document.querySelector('#chart-select').value
const container = document.querySelector('.charts')
const chartDiv = document.createElement('div')
chartDiv.style.width = chartSize
chartDiv.style.height = chartSize
container.appendChild(chartDiv)
chartDiv.id = `chart-${container.childNodes.length}`
fjs.setChart(chart, '#' + chartDiv.id)
}
fjs.setSubsets([
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])
function loadData () {
deleteData()
fjs.loadData([
{
dataType: 'numerical',
field: 'alcohol'
},
{
dataType: 'numerical',
field: 'chlorides'
},
{
dataType: 'numerical',
field: 'citric acid'
},
{
dataType: 'numerical',
field: 'density'
},
{
dataType: 'numerical',
field: 'fixed acidity'
},
{
dataType: 'numerical',
field: 'free sulfur dioxide'
dataType: 'categorical',
field: 'gender'
},
{
dataType: 'numerical',
field: 'pH'
dataType: 'categorical',
field: 'race'
},
{
dataType: 'numerical',
field: 'quality'
dataType: 'categorical',
field: 'tumor_stage'
},
{
dataType: 'numerical',
field: 'residual sugar'
dataType: 'categorical',
field: 'miR1269a_expression'
},
{
dataType: 'numerical',
field: 'sulphates'
field: 'year_of_birth'
},
{
dataType: 'numerical',
field: 'total sulfur dioxide'
},
{
dataType: 'categorical',
field: 'type'
field: 'days_to_death'
},
{
dataType: 'numerical',
field: 'volatile acidity'
dataType: 'numerical_array',
field: 'miRNA'
}
])
}
</script>
function deleteData () {
fjs.clearCache()
<style>
.charts > div {
float: left;
}
function setCharts () {
const vms = [
fjs.setChart('correlation-analysis', '.chart-1'),
fjs.setChart('correlation-analysis', '.chart-2'),
fjs.setChart('correlation-analysis', '.chart-3'),
fjs.setChart('correlation-analysis', '.chart-4'),
fjs.setChart('boxplot', '.chart-5'),
fjs.setChart('boxplot', '.chart-6'),
fjs.setChart('pca-analysis', '.chart-7'),
fjs.setChart('pca-analysis', '.chart-8')
]
.do-table {
border-collapse: collapse;
}
window.addEventListener('load', () => {
setCharts()
})
</script>
.do-table table, .do-table th, .do-table td {
border: 1px solid black;
}
<style>
.charts {
.introduction {
width: 500px;
}
.chart {
float: left;
height: 20vw;
width: 20vw;
.controls {
width: 200px;
display: flex;
flex-direction: column;
}
.controls > * {
margin-bottom: 5px;
}
</style>
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