Commit 65539b08 authored by Sascha Herzinger's avatar Sascha Herzinger

improving R package install speed for CI speedup

parent 06685547
Pipeline #4910 failed with stages
in 27 seconds
......@@ -7,8 +7,10 @@ RUN mkdir /app/ \
&& printf "[lcsb-base]\nname=LCSB Base Repo\nbaseurl=http://lcsb-cent-mirr-server.uni.lu/CentOS/7/os/x86_64/\nenabled=1" > /etc/yum.repos.d/lcsb-base.repo \
&& rm -rf /var/cache/yum \
&& yum clean all \
&& yum install --nogpg -y python34 python34-pip python34-devel readline-devel R \
&& R -e 'source("https://bioconductor.org/biocLite.R"); biocLite(); biocLite("limma")'
&& yum install --nogpg -y python34 python34-pip python34-devel readline-devel R wget \
&& wget https://bioconductor.org/packages/release/bioc/src/contrib/limma_3.36.1.tar.gz
&& R CMD INSTALL limma_*.tar.gz \
&& rm limma_*.tar.gz
COPY tests/ /app/tests/
WORKDIR /app/
ARG SDIST
......
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