Added ignore subset option to most charts

src/vue/charts/PCA.vue

@@ -34,6 +34,12 @@
           Whiten Output
         </label>
       </div>
+      <div>
+        <label>
+          <input type="checkbox" v-model="params.ignoreSubsets"/>
+          Ignore Subsets
+        </label>
+      </div>
     </control-panel>
 
     <svg :width="width" :height="height">
@@ -154,7 +160,8 @@
         selectedPoints: [],
         hasSetFilter: false,
         params: {
-          whiten: false
+          whiten: false,
+          ignoreSubsets: false
         },
         dataUrls: {
           main: '',
@@ -173,7 +180,7 @@
           categories: this.categoryData,
           whiten: this.params.whiten,
           id_filter: this.idFilter.value,
-          subsets: store.getters.subsets
+          subsets: this.params.ignoreSubsets ? [] : store.getters.subsets
         }
       },
       validArgs () {

src/vue/charts/Scatterplot.vue

@@ -28,6 +28,10 @@
           Kendall
         </label>
       </fieldset>
+      <label>
+        Ignore Subsets:
+        <input type="checkbox" v-model="params.ignoreSubsets"/>
+      </label>
     </control-panel>
 
     <svg :height="height" :width="width">
@@ -123,7 +127,8 @@
         categoryData: [],
         categoryColors: d3.schemeCategory10,
         params: {
-          method: 'pearson'
+          method: 'pearson',
+          ignoreSubsets: false
         },
         shownResults: { // initially computed
           coef: 0,
@@ -166,7 +171,7 @@
           y: this.xyData[1],
           id_filter: this.idFilter.value,
           method: this.params.method,
-          subsets: store.getters.subsets,
+          subsets: this.params.ignoreSubsets ? [] : store.getters.subsets,
           categories: this.categoryData
         }
       },

test/demo/demo.html

@@ -37,7 +37,11 @@
   <option value="volcanoplot">Volcanoplot</option>
 </select>
 <input type="button" value="Add Chart" onclick="addChart()"/>
-<input id="chart-size-range" type="range" min="10" max="100" value="30" oninput="setChartSize(this.value)"/>
+<br/>
+<label>
+  Zoom:
+  <input id="chart-size-range" type="range" min="10" max="100" value="30" oninput="setChartSize(this.value)"/>
+</label>
 <br/>
 <br/>
 <input type="button" onclick="loadData()" value="Prepare analysis cache"/>
@@ -109,6 +113,11 @@
         dataType: 'categorical',
         field: 'tumor_stage'
       },
+
+      {
+        dataType: 'categorical',
+        field: 'miR1269a_expression'
+      },
       {
         dataType: 'numerical',
         field: 'year_of_birth'