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```
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## Chapter XII - Work(s) in Progress
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##### CIRCULATORY POTENTIAL #####
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##### CIRCULARY POTENTIAL #####
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- This is where the brain doesn't know when to shut off, and we went on a tanget
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- The question being - does flye or metaspades_hybrid allow for circulisation of the contigs, especially for binning
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```
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agb.py -i methylation_aware_results/assembly/flye/lr/merged/no_barcode/ -a Flye -o flye_methylation_agb_output
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```
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##### Notes - for 2018_GDB data #####
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##### Notes - for 2018_GDB data #####
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1. Flye does not produce metabat bins. Reason == only 2 contigs (less than 1500 bp) have coverages over 1.
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2. Should we adjust the "minCV" parameter for metabat?
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3. Added the snakemake "--keep-going" or "-k" flag to the launcher to finish the independent jobs, and restarted
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