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Title
added mappers to Snakefile
!1
· created
Mar 17, 2020
by
Susheel Busi
Clean-up
Merged
0
updated
Mar 17, 2020
added parameters for binning
!50
· created
Apr 24, 2020
by
Susheel Busi
Merged
0
updated
Apr 24, 2020
added rules for running basecall_qc_merge_NO_MOD.done
!9
· created
Mar 18, 2020
by
Susheel Busi
Merged
0
updated
Mar 18, 2020
added rules for running MMSEQ2 comparisons
!14
· created
Mar 25, 2020
by
Susheel Busi
Greatness achieved
Merged
0
updated
Mar 25, 2020
added rules for running NanoStat on basecalled files without any methylation modifications
!8
· created
Mar 18, 2020
by
Susheel Busi
Merged
0
updated
Mar 18, 2020
added tidyverse and cowplot
!23
· created
Apr 19, 2020
by
Susheel Busi
Merged
0
updated
Apr 19, 2020
adding the cluster configuration file
!56
· created
Apr 25, 2020
by
Susheel Busi
Merged
0
updated
Apr 25, 2020
Add latest figure updates
!70
· created
Jun 09, 2020
by
Valentina Galata
Manuscript - initial version
Clean Up
Figure
Manuscript
Merged
0
updated
Jun 09, 2020
Add PlasFlow and RGI
!69
· created
Jun 03, 2020
by
Valentina Galata
checkpoint_snakefile
Merged
Approved
1
0
updated
Jun 03, 2020
Add zymo workflow
!78
· created
Dec 08, 2020
by
Valentina Galata
The bright future
bright_future
Merged
0
updated
Dec 08, 2020
BINNING-snakefiles
!26
· created
Apr 20, 2020
by
Susheel Busi
Merged
0
updated
Apr 20, 2020
changes for 2019 data
!66
· created
May 07, 2020
by
Susheel Busi
Merged
0
updated
May 07, 2020
changes to dependencies
!21
· created
Apr 19, 2020
by
Susheel Busi
Merged
0
updated
Apr 19, 2020
changes to mmseq2 rules
!15
· created
Mar 25, 2020
by
Susheel Busi
Greatness achieved
Merged
0
updated
Mar 25, 2020
CHECKM files that are required for the bin contamination checks
!29
· created
Apr 21, 2020
by
Susheel Busi
Merged
1
0
updated
Apr 21, 2020
cleaner snakefile for workflow
!64
· created
May 01, 2020
by
Susheel Busi
Merged
0
updated
May 01, 2020
config file
!53
· created
Apr 25, 2020
by
Susheel Busi
Merged
0
updated
Apr 25, 2020
config file updates with GTDBTK data paths
!34
· created
Apr 22, 2020
by
Susheel Busi
Merged
1
0
updated
Apr 22, 2020
created modular parts of the SNAKEFILE for ease of handling and downstream processes
!51
· created
Apr 25, 2020
by
Susheel Busi
Merged
0
updated
Apr 25, 2020
edited the compute genomecov time
!27
· created
Apr 20, 2020
by
Susheel Busi
Merged
0
updated
Apr 20, 2020
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