Merge requests · ESB / ONT_pilot_gitlab

Merge trains

added mappers to Snakefile

!1 · created Mar 17, 2020 by Susheel Busi Clean-up
- Merged
updated Mar 17, 2020
included 'mappers' in other redundant lines

!2 · created Mar 17, 2020 by Susheel Busi Clean-up
- Merged
- 1
updated Mar 17, 2020
this is the original file created by CCL for ONT snakemake analyses

!3 · created Mar 17, 2020 by Susheel Busi Greatness achieved
- Merged
updated Mar 17, 2020
minor changes to line 61

!4 · created Mar 17, 2020 by Susheel Busi
- Merged
updated Mar 17, 2020
updated Snakefile

!5 · created Mar 17, 2020 by Susheel Busi
- Merged
updated Mar 17, 2020
updated files with NO_MOD .cfg basecalling for comparison

!6 · created Mar 17, 2020 by Susheel Busi Clean-up
- Merged
updated Mar 17, 2020
'rule all' updated

!7 · created Mar 18, 2020 by Susheel Busi Greatness achieved
- Merged
updated Mar 18, 2020
added rules for running NanoStat on basecalled files without any methylation modifications

!8 · created Mar 18, 2020 by Susheel Busi
- Merged
updated Mar 18, 2020
added rules for running basecall_qc_merge_NO_MOD.done

!9 · created Mar 18, 2020 by Susheel Busi
- Merged
updated Mar 18, 2020
Work

!10 · created Mar 18, 2020 by Susheel Busi
- Merged
updated Mar 18, 2020
Work

!11 · created Mar 18, 2020 by Susheel Busi
- Merged
updated Mar 18, 2020
included nanopolish indexing

!13 · created Mar 19, 2020 by Susheel Busi
- Merged
updated Mar 19, 2020
added rules for running MMSEQ2 comparisons

!14 · created Mar 25, 2020 by Susheel Busi Greatness achieved
- Merged
updated Mar 25, 2020
changes to mmseq2 rules

!15 · created Mar 25, 2020 by Susheel Busi Greatness achieved
- Merged
updated Mar 25, 2020
Work

!16 · created Mar 25, 2020 by Susheel Busi
- Merged
updated Mar 25, 2020
updates to mmseq2 section made

!17 · created Apr 15, 2020 by Susheel Busi
- Merged
updated Apr 15, 2020
updated 'interactive' and 'batch' cpus to bigmem due to occupied CPUs in the other two

!18 · created Apr 16, 2020 by Susheel Busi
- Merged
updated Apr 16, 2020
updated Snakefile

!19 · created Apr 18, 2020 by Susheel Busi
- Merged
updated Apr 18, 2020
Major changes including plotting files

!20 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
changes to dependencies

!21 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020