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Title
possible final Snakefile for metaspades with WORKING gtdbtk
!32
· created
Apr 22, 2020
by
Susheel Busi
Merged
0
updated
Apr 22, 2020
removed the output for the wrapper rule - MAPPING
!45
· created
Apr 23, 2020
by
Susheel Busi
Merged
0
updated
Apr 23, 2020
'rule all' updated
!7
· created
Mar 18, 2020
by
Susheel Busi
Greatness achieved
Merged
0
updated
Mar 18, 2020
symlinks for the assemblies for BINNING was failing, so updated the symlink command
!46
· created
Apr 23, 2020
by
Susheel Busi
Merged
0
updated
Apr 23, 2020
this is the original file created by CCL for ONT snakemake analyses
!3
· created
Mar 17, 2020
by
Susheel Busi
Greatness achieved
Merged
0
updated
Mar 17, 2020
updated config file
!36
· created
Apr 22, 2020
by
Susheel Busi
Merged
1
0
updated
Apr 22, 2020
updated configs, rules, etc. for 2019_GDB ONT analyses
!65
· created
May 06, 2020
by
Susheel Busi
Merged
0
updated
May 06, 2020
updated files with NO_MOD .cfg basecalling for comparison
!6
· created
Mar 17, 2020
by
Susheel Busi
Clean-up
Merged
0
updated
Mar 17, 2020
updated folder
!60
· created
Apr 29, 2020
by
Susheel Busi
Merged
0
updated
Apr 29, 2020
updated 'interactive' and 'batch' cpus to bigmem due to occupied CPUs in the other two
!18
· created
Apr 16, 2020
by
Susheel Busi
Merged
0
updated
Apr 16, 2020
updated metaspades snakefile and cluster files with working DAS_Tool and CheckM
!30
· created
Apr 21, 2020
by
Susheel Busi
Merged
1
0
updated
Apr 21, 2020
Updated "near-final" SNAKEFILE and CONFIG.yaml file
!39
· created
Apr 22, 2020
by
Susheel Busi
Merged
0
updated
Apr 22, 2020
updated R environment file
!22
· created
Apr 19, 2020
by
Susheel Busi
Merged
0
updated
Apr 19, 2020
updated rules
!62
· created
Apr 29, 2020
by
Susheel Busi
Merged
0
updated
Apr 29, 2020
updated Snakefile
!19
· created
Apr 18, 2020
by
Susheel Busi
Merged
0
updated
Apr 18, 2020
updated Snakefile
!5
· created
Mar 17, 2020
by
Susheel Busi
Merged
0
updated
Mar 17, 2020
updated snakefile and new dastool env
!38
· created
Apr 22, 2020
by
Susheel Busi
Merged
1
0
updated
Apr 22, 2020
updated Snakefile, cluster and config for metaT read mapping
!28
· created
Apr 21, 2020
by
Susheel Busi
Merged
0
updated
Apr 21, 2020
updated the mapping rules to include metaspades.bam. Included explicit target...
!73
· created
Jun 09, 2020
by
Susheel Busi
Merged
0
updated
Jun 09, 2020
updated with working GTDBTK paths and commands
!33
· created
Apr 22, 2020
by
Susheel Busi
Merged
0
updated
Apr 22, 2020
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