Issues · ESB / ONT_pilot_gitlab

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Basecalling

#1 · created Mar 17, 2020 by Susheel Busi
- CLOSED
- 0
updated Jun 10, 2020
Basecalling

#2 · created Mar 17, 2020 by Susheel Busi Greatness achieved To Do
- CLOSED
- 1
updated Jun 10, 2020
Binning

#3 · created Mar 17, 2020 by Susheel Busi To Do
- CLOSED
- 1
- 1
updated Apr 23, 2020
Assess closed genomes

#4 · created Mar 17, 2020 by Susheel Busi Analysis Somewhere over the rainbow
- CLOSED
- 2
updated Sep 29, 2020
Clustering analyses - lr vs sr vs hybrid

#6 · created Mar 17, 2020 by Susheel Busi To Do
- CLOSED
- 1
updated Jun 10, 2020
metaT mapping

#7 · created Mar 17, 2020 by Susheel Busi To Do
- CLOSED
- 1
- 0
updated Apr 21, 2020
Flye & Megahit binning

#8 · created Apr 20, 2020 by Susheel Busi To Do
- CLOSED
- 1
updated Apr 26, 2020
Metaspades Hybrid binning

#10 · created Apr 20, 2020 by Susheel Busi To Do
- CLOSED
- 1
- 0
updated Apr 26, 2020
Repeat for 'Methylation-aware' results

#11 · created Apr 20, 2020 by Susheel Busi
- CLOSED
- 1
- 0
updated May 14, 2020
CheckM & GTDBtk analyses

#12 · created Apr 20, 2020 by Susheel Busi To Do
- CLOSED
- 1
- 0
updated Apr 26, 2020
FLYE binning

#13 · created Apr 26, 2020 by Susheel Busi
- CLOSED
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- 1
updated May 14, 2020
Figure: QUAST

#15 · created May 27, 2020 by Susheel Busi Manuscript - initial version Figure
- CLOSED
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updated Jun 04, 2020
Figure: MMSEQ

#16 · created May 27, 2020 by Susheel Busi Manuscript - initial version Figure
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- 12
updated Jun 04, 2020
Figure: Partial gene counts

#17 · created May 27, 2020 by Susheel Busi Manuscript - initial version Figure
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- 3
updated Jun 04, 2020
Figure: NanoStats

#18 · created May 27, 2020 by Susheel Busi Manuscript - initial version Figure
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- 12
updated Jun 04, 2020
Figure: CRISPRs

#19 · created May 28, 2020 by Susheel Busi Manuscript - initial version Figure
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- 11
updated Jun 09, 2020
snakefile - SAMTOOLS & CRISPR

#20 · created May 28, 2020 by Susheel Busi Analyses
- CLOSED
- 1
updated May 28, 2020
Figure: experimental design

#21 · created May 28, 2020 by Susheel Busi Manuscript - v2 Figure
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updated Nov 16, 2020
Figure: DIAMOND query/subject ratio vs full/partial ORFs 2 of 2 tasks completed

#22 · created May 28, 2020 by Valentina Galata Manuscript - initial version Analysis Figure Investigation
- CLOSED
- 6
updated Jul 02, 2020
Analysis/Figure: mappability index

#23 · created May 28, 2020 by Susheel Busi Manuscript - initial version Analysis Clean Up Figure
- CLOSED
- 11
updated Jul 02, 2020