Issues · ESB / ONT_pilot_gitlab

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ASSEMBLER addition - OPERA-MS

#40 · created Jun 23, 2020 by Susheel Busi Manuscript - initial version Jun 29, 2020 Analysis Manuscript
- CLOSED
- 6
updated Jun 25, 2020
casc: Can't locate CASC/Reporting.pm in @INC

#48 · created Jul 02, 2020 by Susheel Busi Clean-up Jul 3, 2020 Bug
- CLOSED
- 7
updated Jul 07, 2020
Manuscript submission (preprint, Genome Biology) 21 of 21 tasks completed

#127 · created Apr 12, 2021 by Valentina Galata Manuscript - v2 Apr 30, 2021 Manuscript
- CLOSED
- 3
updated Apr 27, 2021
ppc

#129 · created Jul 06, 2021 by Laurent Heirendt
- CLOSED
- 5
updated Sep 01, 2021
utils: ave_gene_cov bug 10 of 10 tasks completed

#128 · created Apr 20, 2021 by Valentina Galata Manuscript - v2 Analysis Bug
- CLOSED
- 6
updated Apr 21, 2021
Figure: typo in barrnap kingdom names 2 of 2 tasks completed

#125 · created Mar 18, 2021 by Valentina Galata Manuscript - v2 Figure
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- 0
updated Mar 19, 2021
Bug: bbmap: quality encoding offset for LR (GDB, preprocessing) 14 of 14 tasks completed

#124 · created Mar 08, 2021 by Valentina Galata Manuscript - v2 Bug
- CLOSED
- 0
updated Mar 24, 2021
Figure: GDB, nudged RGI hit to ARO:30004454 in Flye

#123 · created Mar 02, 2021 by Valentina Galata Manuscript - v2 Figure
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- 0
updated Mar 02, 2021
Data: mean metaT cov for "unique" genes/proteins (mmseqs2, GDB)

#121 · created Feb 25, 2021 by Valentina Galata Manuscript - v2 Data
- CLOSED
- 0
updated Feb 26, 2021
Investigation: did assembly polishing work?

#120 · created Jan 25, 2021 by Valentina Galata AMR analysis Discussion Investigation
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- 5
updated Jan 25, 2021
Analysis/Figure: protein clustering

#119 · created Jan 22, 2021 by Valentina Galata AMR analysis Analysis Enhancement Figure
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- 0
updated Jan 27, 2021
Analysis/Figure: cov of RGI hits

#118 · created Jan 19, 2021 by Valentina Galata AMR analysis Analysis Enhancement Figure
- CLOSED
- 0
updated Jan 22, 2021
IMP3 - GDB metaG/metaT 1 of 1 task completed

#114 · created Dec 10, 2020 by Susheel Busi
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- 0
updated Dec 10, 2020
Report/Figure: saving upsetr plots

#112 · created Dec 02, 2020 by Valentina Galata The bright future Bug Figure
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- 0
updated Jan 12, 2021
Zymo: extra analysis

#111 · created Dec 01, 2020 by Valentina Galata The bright future Analysis Enhancement Figure
- CLOSED
- 5
updated Jan 19, 2021
Assembly: canu's genomeSize parameter test

#110 · created Nov 20, 2020 by Valentina Galata The bright future Investigation Tool
- CLOSED
- 1
- 3
updated Dec 08, 2020
Report/Figure: RGI results

#109 · created Nov 19, 2020 by Valentina Galata The bright future Figure
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- 0
updated Nov 30, 2020
Report/Figure: contig coverage segmentation

#108 · created Nov 19, 2020 by Valentina Galata The bright future Figure
- CLOSED
- 0
updated Nov 30, 2020
Analysis: contig coverage segmentation

#107 · created Nov 16, 2020 by Valentina Galata The bright future Enhancement Tool
- CLOSED
- 2
updated Nov 26, 2020
Annotation: RGI: invalid character error

#106 · created Nov 13, 2020 by Valentina Galata The bright future Bug Tool
- CLOSED
- 0
updated Nov 13, 2020