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ONT_pilot_gitlab
Issues
Open
6
Closed
20
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26
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Created date
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Updated date
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Due date
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Title
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Blocking
Error: assembly alignment error in mummer/dnadiff (rumen, LR assemblies)
#116
· created
Dec 14, 2020
by
Valentina Galata
Bug
Tool
0
updated
Jan 19, 2021
Error: segmentation fault for hmmsearch (rumen/aquifer, LR assemblies)
#115
· created
Dec 10, 2020
by
Valentina Galata
Bug
Tool
2
updated
Jan 19, 2021
Prodigal benchmark
#113
· created
Dec 09, 2020
by
Valentina Galata
Enhancement
Investigation
Tool
8
updated
Jan 19, 2021
Assembly: canu's genomeSize parameter test
#110
· created
Nov 20, 2020
by
Valentina Galata
The bright future
Investigation
Tool
CLOSED
1
3
updated
Dec 08, 2020
Analysis: contig coverage segmentation
#107
· created
Nov 16, 2020
by
Valentina Galata
The bright future
Enhancement
Tool
CLOSED
2
updated
Nov 26, 2020
Annotation: RGI: invalid character error
#106
· created
Nov 13, 2020
by
Valentina Galata
The bright future
Bug
Tool
CLOSED
0
updated
Nov 13, 2020
Assemly: MetaSPAdes hybrid: scaffolds vs contigs
#105
· created
Nov 13, 2020
by
Valentina Galata
The bright future
Enhancement
Tool
CLOSED
0
updated
Nov 13, 2020
Assembly: OPERA-MS: change CMD (output, options, tmp files)
#104
· created
Nov 13, 2020
by
Valentina Galata
The bright future
Enhancement
Tool
CLOSED
0
updated
Nov 13, 2020
Analysis: Do not update DIAMOND
#101
· created
Oct 28, 2020
by
Valentina Galata
The bright future
Bug
Tool
CLOSED
0
updated
Oct 28, 2020
Annotation/Analysis: FAMLI
#99
· created
Oct 19, 2020
by
Valentina Galata
Stretch goal
Analysis
Enhancement
Somewhere over the rainbow
Tool
0
updated
Oct 19, 2020
Error: operams assembly using spades contigs
#98
· created
Oct 09, 2020
by
Valentina Galata
The bright future
Bug
Tool
CLOSED
6
updated
Nov 13, 2020
Analysis: Comparing assemblies: MashMap
#95
· created
Sep 29, 2020
by
Valentina Galata
The bright future
Analysis
Tool
CLOSED
0
updated
Nov 03, 2020
Analysis: Comparing assemblies: SibeliaZ
#94
· created
Sep 29, 2020
by
Valentina Galata
Stretch goal
Analysis
Tool
3
updated
Nov 10, 2020
Analysis: Comparing assemblies: mummer/dnadiff
#93
· created
Sep 29, 2020
by
Valentina Galata
The bright future
Analysis
Tool
CLOSED
0
updated
Nov 03, 2020
Annotation: KEGG
#92
· created
Sep 29, 2020
by
Valentina Galata
The bright future
Tool
CLOSED
2
updated
Oct 20, 2020
Assembly: MaSuRCA
#91
· created
Sep 29, 2020
by
Valentina Galata
The bright future
Tool
CLOSED
1
updated
Oct 07, 2020
Assembly: Update Flye
#90
· created
Sep 29, 2020
by
Valentina Galata
The bright future
Tool
CLOSED
0
updated
Oct 08, 2020
Alternative tools for gene calling
#85
· created
Sep 18, 2020
by
Valentina Galata
Stretch goal
Analysis
Somewhere over the rainbow
Tool
1
updated
Sep 18, 2020
Analysis: Comparing assemblies: FastANI
#80
· created
Aug 18, 2020
by
Valentina Galata
The bright future
Analysis
Tool
CLOSED
0
updated
Oct 20, 2020
tax. classification of proteins w/ kaiju
#67
· created
Jul 24, 2020
by
Valentina Galata
Analyses
Analysis
Tool
CLOSED
3
updated
Jul 29, 2020
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