casc: Can't locate CASC/Reporting.pm in @INC
Got the below error when running the mock
sample through the full pipeline
Can't locate CASC/Reporting.pm in @INC (you may need to install the CASC::Reporting module) (@INC contains: /mnt/irisgpfs/users/sbusi/apps/miniconda3/envs/snakemake/pipeline/1d36637e/lib/site_perl/5.26.2/x86_64-linux-thread-multi /mnt/irisgpfs/users/sbusi/apps/miniconda3/envs/snakemake/pipeline/1d36637e/lib/site_perl/5.26.2 /mnt/irisgpfs/users/sbusi/apps/miniconda3/envs/snakemake/pipeline/1d36637e/lib/5.26.2/x86_64-linux-thread-multi /mnt/irisgpfs/users/sbusi/apps/miniconda3/envs/snakemake/pipeline/1d36637e/lib/5.26.2 .) at /mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/workflow/../submodules/casc/bin/casc line 103.
BEGIN failed--compilation aborted at /mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/workflow/../submodules/casc/bin/casc line 103.
@cedric.laczny checked and it seems to be there:
0 claczny@access1(iris-cluster) cedric_ont_basecalling/2019_GDB/mock $ find $PWD/ont_pilot_gitlab/ -name "*Reporting*"
/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/submodules/casc/lib/site_perl/CASC/Reporting.pm
/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/submodules/casc/lib/CASC/Reporting.pm
/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/submodules/casc/blib/lib/CASC/Reporting.pm
/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/mock/ont_pilot_gitlab/submodules/casc/src/Reporting.pm