Tool installation: casc
Install casc
using git submodule
and a dedicated conda
YAML file
Current set-up:
# downloading and installing CASC: https://github.com/dnasko/CASC
cd /mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/
git clone https://github.com/dnasko/CASC.git# installing locally
cd CASC
conda create -n perl -c anaconda perl
conda activate perl
# installing CASC
PERL Makefile.PL PREFIX=/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/crispr
make
make test
make install
# exporting the PATHs
export PATH=$PATH:/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/crispr/bin
export PERL5LIB=/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/crispr/lib/site_perl