Commits · cdfe3e7e45986cb6f8d6926c7eb9e8072a07ff01 · ESB / ONT_pilot_gitlab

10 Mar, 2021 1 commit
- config: unified sbatch scripts, snakemake's conda env path as arg · cdfe3e7e
  Valentina Galata authored Mar 10, 2021
  
  cdfe3e7e
12 Jan, 2021 1 commit
- config: updated aquifer · fd8b873f
  Valentina Galata authored Jan 12, 2021
  
  fd8b873f
13 Nov, 2020 1 commit
- config: mv sub-folders: lowcase sample names · 22c1b7ba
  Valentina Galata authored Nov 13, 2020
  
  22c1b7ba
12 Nov, 2020 1 commit
- config: major update · c0b0ba64
  Valentina Galata authored Nov 12, 2020
  
  c0b0ba64
03 Nov, 2020 1 commit
- config: updated GDB and Zymo · 778fc6a9
  Valentina Galata authored Nov 03, 2020
  
  778fc6a9
28 Oct, 2020 1 commit
- config: updated slurm configs and sbatch scripts for GDB and Zymo (issue #100 ) · 97df27a6
  Valentina Galata authored Oct 28, 2020
  
  97df27a6
15 Oct, 2020 1 commit
- config: updated GDB · 6867908f
  Valentina Galata authored Oct 15, 2020
  
  6867908f
21 Aug, 2020 2 commits
- updated readme; configs: updated conda env path in all sbatch.sh files · cf5125be
  Valentina Galata authored Aug 21, 2020
  
  cf5125be
- configs: sbatch.sh: run snakemake only if conda env activation has worked · 34ac0857
  Valentina Galata authored Aug 21, 2020
  
  34ac0857
16 Aug, 2020 1 commit
- GDB config: sormerna cores and runtime, other minor changes · 7bca601e
  Valentina Galata authored Aug 16, 2020
  
  7bca601e
14 Aug, 2020 1 commit
- updated GDB config files · 48aa5933
  Valentina Galata authored Aug 14, 2020
  
  48aa5933
13 Aug, 2020 1 commit
- updated GDB config files · ae3b5884
  Valentina Galata authored Aug 13, 2020
  
  ae3b5884
03 Aug, 2020 1 commit
- updated GDB config files · 689e112b
  Valentina Galata authored Aug 03, 2020
  
  689e112b
24 Jul, 2020 1 commit
- tax step: added kaiju (cdhit, issue #67), minor changes for kraken2 rules,... · 726b11a8
  Valentina Galata authored Jul 24, 2020
```
tax step: added kaiju (cdhit, issue #67), minor changes for kraken2 rules, updated Snakefile and GDB configs
```
  726b11a8
23 Jul, 2020 1 commit
- updated GDB contig files · cb0e17b2
  Valentina Galata authored Jul 23, 2020
  
  cb0e17b2
22 Jul, 2020 1 commit
- updated GDB config files · 4ee61449
  Valentina Galata authored Jul 22, 2020
  
  4ee61449
13 Jul, 2020 1 commit
- minor changes in sbatch.sh (GDB, Zymo) · 6809a185
  Valentina Galata authored Jul 13, 2020
  
  6809a185
09 Jul, 2020 1 commit
- added circ_contigs_fasta.py (issue #53 ); added kraken2 (tax) (issue #55 ) · 334acc25
  Valentina Galata authored Jul 09, 2020
  
  334acc25
08 Jul, 2020 1 commit
- updated sbatch.sh for GDB · 2362a407
  Valentina Galata authored Jul 08, 2020
  
  2362a407
30 Jun, 2020 1 commit
- added configs for GDB (same as the ones in config/); mv sbatch.sh to config/ (issue #45 ) · 7ccc3d89
  Valentina Galata authored Jun 30, 2020
  
  7ccc3d89
29 Jun, 2020 1 commit
- sbatch.sh -- more cores for the pipeline · 3a97208b
  Valentina Galata authored Jun 29, 2020
  
  3a97208b
24 Jun, 2020 1 commit
- changed structure to incl metat: updated prepare_input and preprocessing, other minor changes · a17cbe8b
  Valentina Galata authored Jun 24, 2020
  
  a17cbe8b
11 Jun, 2020 1 commit
- sbatch.sh: more cores for snakemake · ac1679b0
  Valentina Galata authored Jun 11, 2020
  
  ac1679b0
10 Jun, 2020 2 commits
- init setup for preprocessing and assembly · 6cbf5ed6
  Valentina Galata authored Jun 10, 2020
  
  6cbf5ed6
- initial fast5 setup, basecalling and nanostat · 5feedaab
  Valentina Galata authored Jun 10, 2020
  
  5feedaab