Commits · cdfe3e7e45986cb6f8d6926c7eb9e8072a07ff01 · ESB / ONT_pilot_gitlab

10 Mar, 2021 1 commit
- config: unified sbatch scripts, snakemake's conda env path as arg · cdfe3e7e
  Valentina Galata authored Mar 10, 2021
  
  cdfe3e7e
05 Mar, 2021 1 commit
- figures: changed sample order in config · cc47286c
  Valentina Galata authored Mar 05, 2021
  
  cc47286c
02 Mar, 2021 1 commit
- figures: added workflow for manuscript figures (not finished, issue #123 ) · 43d6b1c4
  Valentina Galata authored Mar 02, 2021
  
  43d6b1c4
26 Feb, 2021 1 commit
- reports: added bash script (and a note in readme) · c51b0cbe
  Valentina Galata authored Feb 26, 2021
  
  c51b0cbe
27 Jan, 2021 1 commit
- analysis: mmseqs2: bug fix (wrong db type) (issue #119 ); metap - whether faa output is tmp · bda364f2
  Valentina Galata authored Jan 27, 2021
  
  bda364f2
25 Jan, 2021 1 commit
- analysis: mmseqs2 prot clustering (issue #119 ) · db966e98
  Valentina Galata authored Jan 25, 2021
  
  db966e98
12 Jan, 2021 4 commits
- new workflow: gene calling (related to issue #113 ) · de9b0799
  Valentina Galata authored Jan 12, 2021
  
  de9b0799
- config: updated aquifer · 2af53d5b
  Valentina Galata authored Jan 12, 2021
  
  2af53d5b
- config: updated aquifer · fd8b873f
  Valentina Galata authored Jan 12, 2021
  
  fd8b873f
- config: updated rumen · 69380046
  Valentina Galata authored Jan 12, 2021
  
  69380046
08 Dec, 2020 2 commits
- zymo: config: updated rumen (to match bright_future branch); rm unused zymo configs · 1648784c
  Valentina Galata authored Dec 08, 2020
  
  1648784c
- config: updated rumen · 0ab002e1
  Valentina Galata authored Dec 08, 2020
  
  0ab002e1
02 Dec, 2020 1 commit
- zymo: config: updated zymo slurm and sbatch files · d5045300
  Valentina Galata authored Dec 02, 2020
  
  d5045300
01 Dec, 2020 6 commits
- zymo: updated/modified workflow (not finished) · c5a1bf10
  Valentina Galata authored Dec 01, 2020
  
  c5a1bf10
- zymo: rm tmp files on config/zymo · 0ca83cb3
  Valentina Galata authored Dec 01, 2020
  
  0ca83cb3
- config: aquifer update · 978c9167
  Valentina Galata authored Dec 01, 2020
  
  978c9167
- config: rumen update · c5908fcc
  Valentina Galata authored Dec 01, 2020
  
  c5908fcc
- config: gdb update · 921f7541
  Valentina Galata authored Dec 01, 2020
  
  921f7541
- config: zymo update · b8ac4fd6
  Valentina Galata authored Dec 01, 2020
  
  b8ac4fd6
24 Nov, 2020 1 commit
- config: updated nwc (excl canu, incl raven) · 339aac7c
  Valentina Galata authored Nov 24, 2020
  
  339aac7c
16 Nov, 2020 1 commit
- config: updated nwc · 832868b4
  Valentina Galata authored Nov 16, 2020
  
  832868b4
13 Nov, 2020 7 commits
- config: updates for gdb/zymo/nwc (others - NOT done yet) · 7e3b1cd4
  Valentina Galata authored Nov 13, 2020
  
  7e3b1cd4
- working snakefile with VG's suggested modiifcations · 6649e41c
  Susheel Busi authored Nov 13, 2020
  
  6649e41c
- updated zymo rules and files · 2ea53754
  Susheel Busi authored Nov 13, 2020
  
  2ea53754
- updated rules for zymo download and prodigal runs · 48189022
  Susheel Busi authored Nov 13, 2020
  
  48189022
- config: mv sub-folders: lowcase sample names · 22c1b7ba
  Valentina Galata authored Nov 13, 2020
  
  22c1b7ba
- init: added localrule for linking files · d9ff5696
  Valentina Galata authored Nov 13, 2020
  
  d9ff5696
- updated folder name · a6093fc4
  Susheel Busi authored Nov 13, 2020
  
  a6093fc4
12 Nov, 2020 1 commit
- config: major update · c0b0ba64
  Valentina Galata authored Nov 12, 2020
  
  c0b0ba64
11 Nov, 2020 2 commits
- config: rm gis20 · 23bf58a1
  Valentina Galata authored Nov 11, 2020
  
  23bf58a1
- config: added rumen (fast5) · 38005e65
  Valentina Galata authored Nov 11, 2020
  
  38005e65
10 Nov, 2020 4 commits
- updated rules for running SibeliaZ against zymo · 48f71674
  Susheel Busi authored Nov 10, 2020
  
  48f71674
- updated slurm and Snakefile(s) · b2909663
  Susheel Busi authored Nov 10, 2020
  
  b2909663
- final SibeliaZ rule updated · aa3d9acc
  Susheel Busi authored Nov 10, 2020
  
  aa3d9acc
- added rules and config parameters for SibeliaZ · c1f5fce1
  Susheel Busi authored Nov 10, 2020
  
  c1f5fce1
09 Nov, 2020 2 commits
- workflow: raw data download (issue #102 ) · 7b93a40e
  Valentina Galata authored Nov 09, 2020
  
  7b93a40e
- config: rm ganges · f2abca55
  Valentina Galata authored Nov 09, 2020
  
  f2abca55
06 Nov, 2020 1 commit
- Rules for tables to compare different assemblers and their mapping to zymo · 2578f3d8
  Susheel Busi authored Nov 06, 2020
  
  2578f3d8
05 Nov, 2020 2 commits
- Comparing the headers in comparision of read-type and assembler against zymo · b150f5eb
  Susheel Busi authored Nov 05, 2020
  
  b150f5eb
- added header extraction rules to Snakefile · 7c15b717
  Susheel Busi authored Nov 05, 2020
  
  7c15b717