Commit dc9fbea8 authored by Valentina Galata's avatar Valentina Galata
Browse files

updated readme

parent 712d2fea
......@@ -121,4 +121,17 @@ To execute this workflow for all samples:
## Creating figures for the paper
*TODO*
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*TODO*
```bash
conda activate "YourEnvName"
snakemake -s workflow_figures/Snakefile --cores 1 --configfile config/fig.yaml --use-conda --conda-prefix "WhereToCreateCondEnvs" -rpn # dry-run
```
# Notes
Notes about manual analyses done using the generated data.
- `gdb_mmseqs2_uniq_metat.md`: sample GDB, unique genes and their metaT coverage
- `gdb_rgi_aro3004454_flye.md`, `gdb_rgi_other.md`: sample GDB, RGI examples for diff. between SR/Hy and LR, and metaT coverage
- `gdb_barrnap_metat.md`: sample GDB, metaT cov. of some predicted rRNA genes (barrnap)
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