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ONT_pilot_gitlab
Commits
2362a407
Commit
2362a407
authored
Jul 08, 2020
by
Valentina Galata
Browse files
updated sbatch.sh for GDB
parent
c6afa55b
Changes
1
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config/GDB/sbatch.sh
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2362a407
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@@ -22,9 +22,9 @@ ONTP_CORES=60
# snakemake file
ONTP_SMK
=
"workflow/Snakefile"
# config file
ONTP_CONFIG
=
"config/config.yaml"
# USER INPUT REQUIRED
ONTP_CONFIG
=
"config/
GDB/
config.yaml"
# USER INPUT REQUIRED
# slurm config file
ONTP_SLURM
=
"config/slurm.yaml"
ONTP_SLURM
=
"config/
GDB/
slurm.yaml"
# slurm cluster call
ONTP_CLUSTER
=
"-p {cluster.partition} -q {cluster.qos} {cluster.explicit} -N {cluster.nodes} -n {cluster.n} -c {threads} -t {cluster.time} --job-name={cluster.job-name}"
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