Commit 1c0678d6 authored by Valentina Galata's avatar Valentina Galata
Browse files

config: minor change in report shell script

parent 6dc9d206
......@@ -13,5 +13,6 @@ conda activate "${SMK_ENV}"
# create reports
for configfile in ${SMK_CONFIG}; do
echo "Report using ${configfile}"
snakemake -s "workflow_report/Snakefile" --cores 1 --configfile "${configfile}" --use-conda --conda-prefix "${SMK_CONDA}" -rp
done
\ No newline at end of file
done
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