archive: incl ave. metat cov. for genes (GDB), updated readme (issue #128)

README_ARCHIVE.md

@@ -27,6 +27,7 @@ For each sample, the following files were saved (in `<sample>/results/`):
   - polished contigs: `assembly/*/*/ASSEMBLY.POLISHED.fasta` (for LR and Hy only)
 - assembly mapping
   - mapping rate summary stats: `mapping/*/mappability.tsv`
+  - average metaT coverage per gene (GDB): `mapping/metat/*/*/ASSEMBLY.POLISHED.sr.cov.pergene`
 - annotation
   - protein prediction w/ Prodigal
     - FAA FASTA file: `annotation/prodigal/*/*/proteins.faa`

config/archive/results_archive_incl.txt

@@ -31,6 +31,13 @@ assembly/sr/metaspades/ASSEMBLY.fasta
 mapping/metag/mappability.tsv
 # mapping: metat
 mapping/metat/mappability.tsv
+mapping/metat/hy/metaspadeshybrid/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/hy/operamsmegahit/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/hy/operamsmetaspades/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/lr/flye/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/lr/raven/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/sr/megahit/ASSEMBLY.POLISHED.sr.cov.pergene
+mapping/metat/sr/metaspades/ASSEMBLY.POLISHED.sr.cov.pergene
 # annotation: prodigal
 annotation/prodigal/hy/metaspadeshybrid/proteins.faa
 annotation/prodigal/hy/operamsmegahit/proteins.faa