Commit 02b4f793 authored by Valentina Galata's avatar Valentina Galata
Browse files

archive: incl ave. metat cov. for genes (GDB), updated readme (issue #128)

parent 8e6c31fc
......@@ -27,6 +27,7 @@ For each sample, the following files were saved (in `<sample>/results/`):
- polished contigs: `assembly/*/*/ASSEMBLY.POLISHED.fasta` (for LR and Hy only)
- assembly mapping
- mapping rate summary stats: `mapping/*/mappability.tsv`
- average metaT coverage per gene (GDB): `mapping/metat/*/*/ASSEMBLY.POLISHED.sr.cov.pergene`
- annotation
- protein prediction w/ Prodigal
- FAA FASTA file: `annotation/prodigal/*/*/proteins.faa`
......
......@@ -31,6 +31,13 @@ assembly/sr/metaspades/ASSEMBLY.fasta
mapping/metag/mappability.tsv
# mapping: metat
mapping/metat/mappability.tsv
mapping/metat/hy/metaspadeshybrid/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/hy/operamsmegahit/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/hy/operamsmetaspades/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/lr/flye/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/lr/raven/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/sr/megahit/ASSEMBLY.POLISHED.sr.cov.pergene
mapping/metat/sr/metaspades/ASSEMBLY.POLISHED.sr.cov.pergene
# annotation: prodigal
annotation/prodigal/hy/metaspadeshybrid/proteins.faa
annotation/prodigal/hy/operamsmegahit/proteins.faa
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment