Update README.md

README.md

@@ -35,17 +35,17 @@ The targets of perturbagen can be given by user or searched from the ChemPert da
 
 4. **Perturbagen**: The perturbagen name from ChemPert database. If parameter 3 is given, this parameter should be NULL. 
 
-5. **Expression profile file**: Gene expression file of initial cellular state in rds/txt format, which contains the mean expression value for each genes (See example in `testdata/responseTFs_prediction_example/Expression_GSE162876_FPC_Adv_fibrosis.rds`).
+5. **Expression profile file**: Gene expression file of initial cellular state in rds/txt format, which contains the mean expression value for each genes (See example in `testdata/responseTFs_prediction_example/Expression profile_GSE162876_FPC_Adv_fibrosis.rds`).
 
 #### Run test dataset
 
 ```bash
-Rscript pipeline_chempert.R 1 human ../testdata/responseTFs_prediction_example/obeticholic_acid_targets.rds NULL ../testdata/responseTFs_prediction_example/Expression_GSE162876_FPC_Adv_fibrosis.rds 
+Rscript pipeline_chempert.R 1 human ../testdata/responseTFs_prediction_example/obeticholic\ acid_targets.rds NULL ../testdata/responseTFs_prediction_example/Expression\ profile_GSE162876_FPC_Adv_fibrosis.rds 
 ```
 or 
 
 ```bash
-Rscript pipeline_chempert.R 1 human NULL "6-ecdca; 6-ethyl-cdca; 6-ethylchenodeoxycholic acid; 6alpha-ethyl-chenodeoxycholic acid; 6α-ethylchenodeoxycholic acid; obeticholic acid; ocaliva" ../testdata/responseTFs_prediction_example/Expression_GSE162876_FPC_Adv_fibrosis.rds 
+Rscript pipeline_chempert.R 1 human NULL "6-ecdca; 6-ethyl-cdca; 6-ethylchenodeoxycholic acid; 6alpha-ethyl-chenodeoxycholic acid; 6α-ethylchenodeoxycholic acid; obeticholic acid; ocaliva" ../testdata/responseTFs_prediction_example/Expression\ profile_GSE162876_FPC_Adv_fibrosis.rds 
 ```
 #### Option 2: The prediction of perturbagens